Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00689 ATGAGAGTTTCAGCTCAGAGCAACTCTGAGACTGAGACCAACTCATCTTTATTGTCATCATCATTATCATTGTTGTCACAGCCGAAAGGCGGAGAACATAAGACGGAGAAGCGGAACCGCGACTCCAACAAGCACCCAGTGTACCGCGGGGTGCGCATGCGGAACTGGGGGAAGTGGGTGTCGGAAATCCGGGAGCCGCGGAAGAAGTCGCGTATATGGTTGGGCACGTTTCCCACGCCGGAAATGGCGGCGAGAGCGCATGACGTGGCAGCTCTCAGCATAAAGGGGAGCGGCGCCATCCTCAACTTCCCCGAACTCGCGTCCTCGCTTCCTCGTCCCGCGTCGCTCGCCCCTCGCGACGTGCAAGCTGCGGCGACCAGAGCCGCGCACATGGACTTctcctcctcctcctcgtcctcctcctcctcGTTCATTTCCTCGTCTTCATCGTCATTGTCGTCTCTTGTTTCCGCCGCGGACTTGTCCACCGCGTCGGAGGAGCTGAGCGAGATCATCGAGTTGCCCAGGCTGGAAACGAGTTACGAGCTGGGGAACGAGTTCGTGTTCGTGGACTCGCAGGACACGTGGATGTATCAGCCACCGTTGACGCCCTGGCTGCAAACTGCAAACTGTGATGAAAATGAGTTTGCTGTGACCGAGAGTGGGGTTGCGACTAGTTTTGAGAGTTTTCTGTGGGACTACTAA 705 0.5447 MRVSAQSNSETETNSSLLSSSLSLLSQPKGGEHKTEKRNRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSGAILNFPELASSLPRPASLAPRDVQAAATRAAHMDFSSSSSSSSSSFISSSSSSLSSLVSAADLSTASEELSEIIELPRLETSYELGNEFVFVDSQDTWMYQPPLTPWLQTANCDENEFAVTESGVATSFESFLWDY 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00689 234 CDD AP2 48 106 IPR001471 GO:0003700|GO:0006355
Cca05g00689 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 6 232 - -
Cca05g00689 234 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
Cca05g00689 234 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Cca05g00689 234 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Cca05g00689 234 MobiDBLite consensus disorder prediction 30 48 - -
Cca05g00689 234 MobiDBLite consensus disorder prediction 1 48 - -
Cca05g00689 234 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Cca05g00689 234 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Cca05g00689 234 MobiDBLite consensus disorder prediction 1 28 - -
Cca05g00689 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 232 - -
Cca05g00689 234 Pfam AP2 domain 46 96 IPR001471 GO:0003700|GO:0006355
Cca05g00689 234 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00689 Cca-Chr5 17637404 17638762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00689 19 233 AP2-EREBP Transcription Factor Family AT5G11590 63.677 3.05e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca05g00689 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00689 K09286 - gmx:100305349 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00689 05 17637404 17638762 Cca05g00689 05 17637404 17638762 ECH