Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00683 ATGGTCAATTGCAAAATCATTTGTAACAATCCTTTGAAGAAACATTTGGTAGTGGTCATGATGGTTCTTTCTTTCATTTCTAATATTCATGCCCAAGACAGTAGTGACACAGATACCATGCCAAATCTCCCAGAACCTGTTCGACCAAGCAAGGTTGTTGTAATAGTGGTCCTCTCAGTATTATTGACCTTATCAGTTCTCTTACTTCTCTATATAAGGTTCCGCAGAGCCACTTCTCCTGAACTCTTTGAAAGCCGCCATGTACCCAGTTTTCAAGCACTAACTCGATCATTGTCAAGGCTTTCAGGGATAGACAGAGAAGTGATTGAAACACTCCCATTTTTCAGATTCTCTTCCCTTCAGGGGTCCAAAGAAGGGTTGGAGTGCACGGTTTGTCTCTCGCACTTTGAGGACACTGAGATTCTTAGGCTCTTGCCAAAGTGCAAACACGCTTTCCACATGAGTTGCATTGACAAGTGGCTTGAAAATCATTCTAGTTGCCCTCTTTGTAGGAGCAAAGTTGACCCTTTAGACATCAAGAATTTCACTCACTCAGTGAGTTCAAGGTTCCTCAGGGTTCCTTCAAATTTAACCGAGGACACCCACGTTGAAATCTTTGTTCACAGGGAACCATCCCATCGAGGGTCATCATCAGGGTATAGCATTGGAAGCAGGTTTGGGAATTTGGGTTGGAGCAACAAAGAAGAACAACTTCTCATTGATCAAGAGGTTTGTGGCACAAGTGGGAAACACGTGCATAGGTTCAATCACAAAATTGTGGTCTCCGATGTTGTCACAAGGAGCAGGTGGAGTGATCTTAACTCTTCAGACATGTTATCATTGAAGAGTGAGATGCTACATGACATGGCAAGCAGAAGATTCTCTCCCTTTGATGAAAGTTCGTTAATGATAATGAATAGTGATGAGAAGAGGTCTTTGTCTGAGATTGCTCGTGTTCCTAGGTTCATAGAAACGTGCAAGATGAATAGAATGGAAGAAGGTGTAGCATTAGGTGGGAACAATGGGAGGGAAGAGAGGTTGAAGAGGATTTGGTTCCCAATTGCTCAACGAACAGTGCAATGGTTTGCAGGACAAGAGAGGAACTCGAGAGAATTAGAACACAAACATCTAGCTCCAAATGCTTGA 1146 0.4284 MVNCKIICNNPLKKHLVVVMMVLSFISNIHAQDSSDTDTMPNLPEPVRPSKVVVIVVLSVLLTLSVLLLLYIRFRRATSPELFESRHVPSFQALTRSLSRLSGIDREVIETLPFFRFSSLQGSKEGLECTVCLSHFEDTEILRLLPKCKHAFHMSCIDKWLENHSSCPLCRSKVDPLDIKNFTHSVSSRFLRVPSNLTEDTHVEIFVHREPSHRGSSSGYSIGSRFGNLGWSNKEEQLLIDQEVCGTSGKHVHRFNHKIVVSDVVTRSRWSDLNSSDMLSLKSEMLHDMASRRFSPFDESSLMIMNSDEKRSLSEIARVPRFIETCKMNRMEEGVALGGNNGREERLKRIWFPIAQRTVQWFAGQERNSRELEHKHLAPNA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00683 381 SUPERFAMILY RING/U-box 108 177 - -
Cca05g00683 381 CDD RING-H2_PA-TM-RING 128 171 - -
Cca05g00683 381 PANTHER RING-H2 FINGER PROTEIN ATL4J 299 376 - -
Cca05g00683 381 PANTHER RING-H2 FINGER PROTEIN ATL4J 23 299 - -
Cca05g00683 381 Pfam Ring finger domain 128 171 IPR001841 -
Cca05g00683 381 SMART ring_2 129 170 IPR001841 -
Cca05g00683 381 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Cca05g00683 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 178 IPR013083 -
Cca05g00683 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 299 376 - -
Cca05g00683 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00683 Cca-Chr5 17471980 17473373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00683 41 369 C3H Transcription Factor Family AT2G20030 39.779 4.86e-75 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00683 K10664 - gmx:100803881 521.161