Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00682 ATGGAGAGGGTCCTCGGAGGGAAGTATAAAATCGGGAAAAAAATTGGGAGCGGATCATTCGGTGAAATTTACATTGGGGCACATATCGAGACTTCTGAACTTGTGGCCATCAAGATGGAGAGCAGGAAAACCAATCAGCCACAGCTACTGTATGAGTCCAAGTTATATAGTATGCTTCAAGGAGGAAGTGGTATTCCAAGAATGAAATGGTGTGGTACTGATGGAGACAATAATGTTCTTATTATTGAACTTCTTGGACCGAGTCTTGAAGACCTCTTTTTCTTCTGTGGGAATAAATTTTCACTCAAAACAGTGTTGATGTTGGCTGATCAGATGCTTGCAAGGATAGAGTATTTGCACTCCAAAGGATTTTTGCATAGAGACATAAAACCGGATAACTTCCTTATGGGTCTTGGGAAGAAAGCAAATCAGGTTTATATGATTGATTTTGGACTAGCAAAAGGATATAAGGACCCTATCACAAATAAGCATATCCCTTACAGAGAGAACAAGGGCTTAACAGGGACTGCACGTTATGCAAGTTACAATACTCACTCAGGAATTGAGCAAAGCCGACGAGATGATTTGGAGTCTCTTGGGTATGTTTTAATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGCAAGCTGTCAACAAAAAGCAAAAATATGACAAAATTTGCAAAAAGAAGTTATCAACTCCCATTGAGATACTTTGCAAGTCATATCCTGTGGAATTTGCCTCTTACTTTCACTATTGCCGCTCTTTGACATTTGATCAACGGCCAGATTATGGACTTTTGAGACGCCTATTTCGTAATTTGTTCACCCGTGCAGGATACGATTCCGACTATTTATTTGACTGGACCATTCTAAAATATCAGCAGATGCAACAGCAGAAGACACAGAGTCAATCTCCTGCACCACATGCTGTGCTTACTTGTCTTGAACCATTGGATGAGGATAATCATAAAGGAGTCAATGATTCCACTCAAATTGCTGTGGCAACACCATCAATCAATGTTGATCATCCACGTGTTTGTAACACAGCGTCTAATGTTCAGAATCTTAATGCAAAGATTCCAACAGAGAAACATGTATACTACTGA 1113 0.4007 MERVLGGKYKIGKKIGSGSFGEIYIGAHIETSELVAIKMESRKTNQPQLLYESKLYSMLQGGSGIPRMKWCGTDGDNNVLIIELLGPSLEDLFFFCGNKFSLKTVLMLADQMLARIEYLHSKGFLHRDIKPDNFLMGLGKKANQVYMIDFGLAKGYKDPITNKHIPYRENKGLTGTARYASYNTHSGIEQSRRDDLESLGYVLMYFLRGSLPWQGLQAVNKKQKYDKICKKKLSTPIEILCKSYPVEFASYFHYCRSLTFDQRPDYGLLRRLFRNLFTRAGYDSDYLFDWTILKYQQMQQQKTQSQSPAPHAVLTCLEPLDEDNHKGVNDSTQIAVATPSINVDHPRVCNTASNVQNLNAKIPTEKHVYY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00682 370 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00682 370 SMART serkin_6 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00682 370 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00682 370 Gene3D Transferase(Phosphotransferase) domain 1 1 333 - -
Cca05g00682 370 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Cca05g00682 370 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 367 - -
Cca05g00682 370 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Cca05g00682 370 PANTHER CASEIN KINASE-RELATED 1 367 - -
Cca05g00682 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00682 Cca-Chr5 17456651 17470127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00682 11 267 MAP Kinase Kinase Kinase AT1G62400 27.881 5.74e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Cca05g00682 Pkinase 1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00682 K08960 - gmx:100782913 650.973