Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00675 ATGGACAGTGAGCAGAGCATGCCTGCTCCATCTCATGAGTACGCTGATGGTTCCCAGAAAGTCAGAGCATTACATGGGAGGACTACTGGCCCTACAAGGCGTTCTACAAAAGGGCAATGGACACCGGAGGAGGATGATATCTTACGGAAGGCTGTTCAGAGATTTAAAGGAAAAAATTGGAAAAAAATTGCGGAATGTTTCAAGGACAGAACTGATGTGCAATGCCTACATAGGTGGCAGAAAGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTATTGAATTGGTGAAGCAAAATGGACCGAAAAAGTGGTCAGCTATAGCACAACATTTACCTGGACGTATTGGTAAGCAATGCCGAGAAAGGTGGTGTAATCATCTTGATCCTACTATCAAAAAAGAAGCATGGACCCAGGAAGAGGAGTTGGCTCTAATACATTTTCATCGGATGTATGGGAACAAATGGGCAGAATTGTCAAAGTTCATTCCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCTGTGAAAAAGAAATTGGATTCTTATTTGGCATCAGGTTTGCTTAGTCAAATTGAGTCTGTACCTCATGTTGGAAATTCAAATCAACCAACAAGGTTGCAGTGTAGTGATGATAATGGTCCCAAGGGGACTGAAGTTGAGGAAGTTTCTCAGTGCAGCCAAGGTTCAGCTAATGCTGCTTGCTTTCCATCTGCTAGAGGGACGAGCAGTGCTGACTCGCAAACTGGAGAGGCATATAGGCCAGATGAAGAATGTAGTCTTGGAAAGGATCATAATCTGAGTCGAGCATCTTGTTCAGAGGAGCCATATTACGTATCAATAGATGATGTTACTATATGCATCCCAGATATTGCTCACCAAGATGCTTGCAATTCTCAATTCATTGATCAACAGTTACATGAACCTGGAAATTCCATTAGTGGGGATTGTCAGTTCAATATACATTCCATACCCAATATTTCATCACAGTTGCAAAGTGATTGTATAGCTCCTATTGAAATCTGTGACATGGTGAGTGTTCCATTTCAGACATCAGTGGAGTTAGGTGTTTCAGCATCCGGACCTGCATCTATGGATTCTCTTAAACCAGAGCACATGTTGATATCTGATGAAGAATGTTGCAGAGTCCTGTTTTCAGATGCAACGGATGATGGATGTTTTTCCCATGTAGATTACAATAAAGGTGAAGATATGGTTGGATTTTCTGGATGCACTTCATTTCTTTGTCAATCATGTAATATCCAGATATCTGAAATGGGTGGAACCTCAACTCCACATCCAACTTGTCCTCAGTGTTCTAATAATTATAGAGGAGCTTCATCGTCCCAATCTGTACCCATGGTACTCTCTGATAGTGACGATAGGCTGGTGACTACTGCCAATGGCAATCAATTTTTTGGGACTGAGGATTACCAATTTGTCTCCAGAGCACCTGCTAACTCAACTTATTTCAGTGAATTATCTGGTTCTCCTTGTGCTGATGGTATAGGTAGTGAAGTAATGAAAGAGCCACATGATATTCTGAAGGGTACCTCAGAATTGGTCCCTGTAAATACTTCTGGCTGTGTATCAAATGCCAAGCAAATTTGTAATCCAACAGATGAGAAAACAAATGTCCATACCGAAAAGGAGGACCCAGGATCTCTATGTTATGAACCCCCCCGTTTTCCAAGCTTGGATATTCCTTTCTTCAGCTGTGATCTTGTGCAATCTGGGAGTGATCTGCAGCAAGAGTTTAGTCCTTTGGGTCTACGCCAGTTTATGATACCTTCTATGAACTGTCTCACTCCTTTCAGGTTGTGGGACTCACCCTCTCGTGATGATAGTCCAGATGCATTGTTAAAAAGTGCAGCTAAAACTTTTACAGGCACACCATCCATATTAAAGAAACGACACCGAGATTTGTTGTCACCACTCTCGGATAAAAGAATTGATAAGAAACTTGGGACTGACATGGCATCTACCTTTACCAAAAATCTTCCCAGTTTGGATGTCATGTTTGGTGACAATGAGACTCAGGAAGTGGATATGCCTTCATCTTCATCTTCATTGCAAAAACAGAACTCCAGTGCACCTGTTGATGATGATAATAAAGAAAATTGTGGACAGGCTTATAAAGGAGAACAAGTTGAGCATCAATCTGCAATTTTGGATGAAAAGAGCTCTCAAAAAGATACTGTCAACAGTAATTCTCAGCATAATGTAAAGCAACACTCTCTTGATTCTAAAATGAAGGTTGATGCCACATCTACCGAGATTGAGCAACAACCTTCTGGAGTTTTGGTTGAACATGATGTGAATGACCTGTCGCTGTCTTCTCCTGATCAAGTTGGTTTAAAATCAGACAGAGGTTCAGGGTCAAGTGCAAAAACTCCCAAAAGCTTGAACAGGTCCATGGAAGCAGCTCCAAATCAGAGTGGCCATTTGAAATTATCTTCTGAAAATCCATGCTCAAGGGTTAAATCGAATTCTTCCTGTGTTCGTGCAAAGGAGCATGAAAAACTTTCAGTTGCTGTTACTCGTGTACAAGCTCTAGGTGACAATTCAGGGGAACAAACCAGAATGGATGGTGGTTTTGAAACATGTAGCATATTTGGTGGAACACCTTTTAGGAAAGGCATTGAATCACCTTCTGCATGGAAATCTCCTTGGTTCTTCAACCCTTTTCTATCTAGTCCCAGACTTGATACTGATATTACAATTGAGGATTTTCAGTATTTAATGAGGAGCCCGGGTGATAGAAGCTATGATGCAATTGGGTTGTTGAAACAGATCAGTGAACAAACTGCTGCCACATATGCCAATGCTCAGGAGATTTTGGTAAATGAAACTCCTAAGGCATTACCGAAAGATCCATCAGGAAATGACGAGGCTAGGGACCAGGAAAATAATCCTCCCAGTCAGCCTGGCAACCATTCTCAGTTGGCTTCAAATGCTTTGATAGAGCGACGCACACTGGACTTTAGTGAATGTGGAACACCAGGAAAGGGTGATAACAACAAATCCTCATCTGTGAGCTTTTCAAGCCCTTCTTCGTATTTGTTGAAAGGTTGTAGATGA 3111 0.414 MDSEQSMPAPSHEYADGSQKVRALHGRTTGPTRRSTKGQWTPEEDDILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIELVKQNGPKKWSAIAQHLPGRIGKQCRERWCNHLDPTIKKEAWTQEEELALIHFHRMYGNKWAELSKFIPGRTDNAIKNHWNSSVKKKLDSYLASGLLSQIESVPHVGNSNQPTRLQCSDDNGPKGTEVEEVSQCSQGSANAACFPSARGTSSADSQTGEAYRPDEECSLGKDHNLSRASCSEEPYYVSIDDVTICIPDIAHQDACNSQFIDQQLHEPGNSISGDCQFNIHSIPNISSQLQSDCIAPIEICDMVSVPFQTSVELGVSASGPASMDSLKPEHMLISDEECCRVLFSDATDDGCFSHVDYNKGEDMVGFSGCTSFLCQSCNIQISEMGGTSTPHPTCPQCSNNYRGASSSQSVPMVLSDSDDRLVTTANGNQFFGTEDYQFVSRAPANSTYFSELSGSPCADGIGSEVMKEPHDILKGTSELVPVNTSGCVSNAKQICNPTDEKTNVHTEKEDPGSLCYEPPRFPSLDIPFFSCDLVQSGSDLQQEFSPLGLRQFMIPSMNCLTPFRLWDSPSRDDSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRIDKKLGTDMASTFTKNLPSLDVMFGDNETQEVDMPSSSSSLQKQNSSAPVDDDNKENCGQAYKGEQVEHQSAILDEKSSQKDTVNSNSQHNVKQHSLDSKMKVDATSTEIEQQPSGVLVEHDVNDLSLSSPDQVGLKSDRGSGSSAKTPKSLNRSMEAAPNQSGHLKLSSENPCSRVKSNSSCVRAKEHEKLSVAVTRVQALGDNSGEQTRMDGGFETCSIFGGTPFRKGIESPSAWKSPWFFNPFLSSPRLDTDITIEDFQYLMRSPGDRSYDAIGLLKQISEQTAATYANAQEILVNETPKALPKDPSGNDEARDQENNPPSQPGNHSQLASNALIERRTLDFSECGTPGKGDNNKSSSVSFSSPSSYLLKGCR 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00675 1036 PANTHER TRANSCRIPTION REPRESSOR MYB5 4 1035 - -
Cca05g00675 1036 PANTHER MYB PROTEIN-RELATED 4 1035 - -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 1012 1030 - -
Cca05g00675 1036 Gene3D - 36 88 - -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 690 713 - -
Cca05g00675 1036 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Cca05g00675 1036 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 206 222 - -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 689 718 - -
Cca05g00675 1036 Gene3D - 89 140 - -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 786 838 - -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 242 270 - -
Cca05g00675 1036 SMART sant 36 85 IPR001005 -
Cca05g00675 1036 SMART sant 140 188 IPR001005 -
Cca05g00675 1036 SMART sant 88 137 IPR001005 -
Cca05g00675 1036 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Cca05g00675 1036 CDD SANT 143 183 IPR001005 -
Cca05g00675 1036 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 976 997 - -
Cca05g00675 1036 Gene3D - 143 203 - -
Cca05g00675 1036 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 959 1036 - -
Cca05g00675 1036 SUPERFAMILY Homeodomain-like 38 93 IPR009057 -
Cca05g00675 1036 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Cca05g00675 1036 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Cca05g00675 1036 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 206 230 - -
Cca05g00675 1036 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 736 838 - -
Cca05g00675 1036 CDD SANT 40 83 IPR001005 -
Cca05g00675 1036 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 737 754 - -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 242 260 - -
Cca05g00675 1036 MobiDBLite consensus disorder prediction 1 44 - -
Cca05g00675 1036 CDD SANT 91 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00675 Cca-Chr5 17141501 17152223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00675 4 1036 MYB Transcription Factor Family AT4G32730 42.160 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca05g00675 Myb_DNA-binding 4.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00675 - K09420 gmx:100794559 1663.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00675 05 17141501 17152223 Cca05g00675 05 17141501 17152223 ECH
Cca05g00675 05 17141501 17152223 Cca03g01439 03 32799836 32806778 PCT