Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00673 ATGTCCCTTGAAGAGTCGCTAAGATCTCTGCCGCTGGATTACCTGAACCTCCTCATCAACGGCCAGGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGACGTCTGGTTCACGCGCACCGCTGCATACTGGCCGCGCGGAGCCTCTTCTTCAGGAAATTCTTCTGTGGGCCGGACCCACCCTCTGGCCTGGACCCCACCGGCCCAAGGATCAACTCGCGCTCCGGAGTCATACCCGTCAACTCCGTCGGCTCCGAGGTCTTCCTCCTCATGCTCCAGTTTCTCTACAGTGGCCTGGGGTGCGGGAGAACGGGGGGTGTGGGGTGCGGGAAGGAGGTGGGGAAGGTATGTAAATTTAGGAATTTTTATTTTTTTTAA 375 0.5787 MSLEESLRSLPLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGPRINSRSGVIPVNSVGSEVFLLMLQFLYSGLGCGRTGGVGCGKEVGKVCKFRNFYFF 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00673 124 SUPERFAMILY POZ domain 10 97 IPR011333 -
Cca05g00673 124 SMART BTB_4 25 123 IPR000210 GO:0005515
Cca05g00673 124 Pfam BTB/POZ domain 16 97 IPR000210 GO:0005515
Cca05g00673 124 ProSiteProfiles BTB domain profile. 25 97 IPR000210 GO:0005515
Cca05g00673 124 PANTHER REGULATORY PROTEIN NPR5 1 97 - -
Cca05g00673 124 Gene3D Potassium Channel Kv1.1; Chain A 7 99 IPR011333 -
Cca05g00673 124 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 97 IPR044284 GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00673 Cca-Chr5 16998403 16998777 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca05g00673 BTB 7e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00673 K14508 - ccaj:114915492 223.787