Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00672 ATGTCCCTTGAAGAGTCGCTAAGATCTCTGCCGCTGGATTACCTGAACCTCCTCATCAACGGCCAGGCCTTCAGCGACGTCACTTTCAGCGTGGAGGGACGTCTGGTTCACGCGCACCGCTGCATACTGGCCGCGCGGAGCCTCTTCTTCAGGAAATTCTTCTGTGGGCCGGACCCACCCTCTGGCCTGGACCCCACCGGCCCAAGGATCAACTCGCGCTCCGGAGTCATACCCGTCAACTCCGTCGGCTCCGAGGTCTTCCTCCTCATGCTCCAGTTTCTCTACAGTGGCCTGGGGTGCGGGAGAACGGGGGGTGTGGGGTGCGGGAAGGAGGTGGGGAAGcctaacccggctcgaacctgtggtgggttgagttag 378 0.5635 MSLEESLRSLPLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGPRINSRSGVIPVNSVGSEVFLLMLQFLYSGLGCGRTGGVGCGKEVGKPNPARTCGGLS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00672 125 SUPERFAMILY POZ domain 10 97 IPR011333 -
Cca05g00672 125 PANTHER REGULATORY PROTEIN NPR5 1 97 - -
Cca05g00672 125 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 97 IPR044284 GO:0099402
Cca05g00672 125 SMART BTB_4 25 121 IPR000210 GO:0005515
Cca05g00672 125 ProSiteProfiles BTB domain profile. 25 97 IPR000210 GO:0005515
Cca05g00672 125 Pfam BTB/POZ domain 16 97 IPR000210 GO:0005515
Cca05g00672 125 Gene3D Potassium Channel Kv1.1; Chain A 7 99 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00672 Cca-Chr5 16985136 16985640 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca05g00672 BTB 7.1e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00672 K14508 - ccaj:109798552 213.001