Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00649 ATGCAAAAGGATAAGGAAGTTGTTAGCAAAGAGGGTAAGAGTATTGAAATGGAAGGGACTCATGAGAAGGAGGAAACCCTACCACCCGGGTTTAGGTTTCATCCAACCGATGAAGAACTCATCTCTTACTATCTTATAAACAAGATTTCAGATTCTGATTTCACAGGCAAAGCAATAGCTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTTCCGGGGAAGGCGAAGATGGGGCAAAAGGAATGGTACTTCTTCAGTCTAAGAGATCGTAAATACCCAACGGGTGTGAGAACCAACCGAGCAACGAACACGGGGTACTGGAAAACCACAGGGAAAGACAAGGAGATCCTAAACAGTGTTACATCGGAGTTTGTTGGTATGAAGAAGACTTTGGTTTTCTACAAAGGAAGGGCTCCAAGAGGAGAGAAAACCAACTGGGTCATGCATGAATACCGCATTCATTCTAAATCCACCTTCAAAATCAACAAGCAGGAAGAATGGGTGGTTTGCCGCGTATTCCGCAAGAGTGGTGGTGCAAAAAAGTTTCCCTCTTCCACCCACACCAGAGCAGTGATGAATCCCTATAATCTCGAAGTTGGTCCTAGCATCATGCCACCACCAATGATGCACCTGCCAGACCCCACTTCCCATTTCCTCTACGGAAGAAACTACATGTTGAGCAATGCAGAGGTAGCTGAAGTGACAAGGCTCTTAAGAAACGGTGCTGGATCCACCACTGTGATGAACCTACCAATGATGCAGCAGCACCACCATTTGAACAACCCAGTAGCTGCAGCAGGAGGAGGATTCACCATTTCTGGCCTTAACTTGAATCTGGGTGGAGGCACAGTTGCTGCCACCACACAAACACAACACCTTTTGAGGCCAATGATGCTGCCACCACAGCCTTCTCCTGCTCACACTATGGTCCATGGGCATGATCACTTCAGTTCCAACATGGTCACTCCCAATGCTCTTGCTCCTGAAAATGTAGCCTATGGTGGTGCAGATATGAACACTGCAAATTCCCAAGGCAATAGGTACATGGACATGGACCATTGTGTGGATCTAGACAACTACTGGCCTTCCTACTAA 1098 0.4681 MQKDKEVVSKEGKSIEMEGTHEKEETLPPGFRFHPTDEELISYYLINKISDSDFTGKAIADVDLNKCEPWELPGKAKMGQKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSEFVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSTFKINKQEEWVVCRVFRKSGGAKKFPSSTHTRAVMNPYNLEVGPSIMPPPMMHLPDPTSHFLYGRNYMLSNAEVAEVTRLLRNGAGSTTVMNLPMMQQHHHLNNPVAAAGGGFTISGLNLNLGGGTVAATTQTQHLLRPMMLPPQPSPAHTMVHGHDHFSSNMVTPNALAPENVAYGGADMNTANSQGNRYMDMDHCVDLDNYWPSY 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00649 365 Gene3D NAC domain 36 179 IPR036093 GO:0003677|GO:0006355
Cca05g00649 365 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 12 362 - -
Cca05g00649 365 MobiDBLite consensus disorder prediction 1 31 - -
Cca05g00649 365 SUPERFAMILY NAC domain 23 176 IPR036093 GO:0003677|GO:0006355
Cca05g00649 365 Pfam No apical meristem (NAM) protein 28 154 IPR003441 GO:0003677|GO:0006355
Cca05g00649 365 ProSiteProfiles NAC domain profile. 27 176 IPR003441 GO:0003677|GO:0006355
Cca05g00649 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00649 Cca-Chr5 15831203 15837428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00649 18 365 NAC Transcription Factor Family AT2G24430 50.269 5.82e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca05g00649 NAM 1.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00649 - - gmx:100811175 587.03