Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00640 ATGTCGtcgtcttcgtcctccaacagtggatggatctacgacgtgttcgtaagcttcagaggagaagacacgcgaaagactttcgtgtctcatctcgacgctgccctctcaaatgcggggatcaacactttcatcgattacaggcttgagaagggagcggagatagtagcacaactagtgcgagcaatacaagggtctcggatgtccctcatcgttttgtcccttgactatgcttcatcgaggtggtgtcttgatgagcttgtcaaggttagacaatgtgacagaaccgacggccagatggttgtgcccatattctacgatgtttatccatccgatgtGCGTCATCAAACGGGTGCTTTTGGAGAACGCTTTAAAGCACTTGTAGATAAATGTTTACTCCAAGGAATGCACCACCAGTGTTCAAGTTGGAGGGATGCACTCACGACGGTTGCAAATTTAGCAGGTTGCAATTCCAGGAATTTTAGGAGTGATGGTGAGCTAGTGGACCAAATTGTTGAGGATATTTTTCGAAAACTAGACATGGACTTATTGACTATTACTGAATTCCCAGTTGGATTAGAATCGCGAGTGCAACAAGTGATTGACTTTATTAATCATCAATCAGGGAGAGGTTGTGTTgtagggatctggggaatggggggatcgggaaaaacaaccatcgccaaattcatctataatcaaattcgcttgagattcaagcgtagaggtttcattgaagcaagtaatagagggcacattgatttacaagaaaaacttctttcagatgtcctgcgaacaaaggtcaaggtacatagcattgccatgggcataagtatgatcgagaaaagattttgtggagaaaggactctcattgtacttgatgatgttactgagtttgcacaattaaaagcattgtgtggaaattgtaaatggattggtgtaggaagtgtagtcgtcattacaaccagagatgtacgcctactgaaactacttgaagttgattatgtttataaaatggaggaaatggatgaaaatgagtcccttgagctgtttagtcaacatgcttttagggaagaaaaaccaagtgaagacttcaatgaacttgcaagaaatgtagttgcttattgtggaggactacctctggctcttgaagtccttggttcttatttaataaagaggacaaagaaagtatgggaaagtgtcttgttaaaactagaaaaaattcccaattatcaagtgcaaaagatattaagaataagctttgatggtttaagcgaccccttggaaaaggatatattccttgatgtatgttgtttctttataggtaaagacagagcctatgttacagagatactaaacggctgtggattatgtgctgatattggaataacagttctcatagaacgaagtctcataaaagttgaaaagaacaacaaacttggaatgcatcctttgctacgagaaatgggcagagagatcatttgtgaaagttcaagaatcgaacctgggaagcggagtcgattatggtttcaaaaggatgtacttgatgtattgacaaggaatactgggacagaagctattcagggattgagtctgaaactgcgtttcaccatcaaagattgcttcgaagcttatgcttttgtggaaatgaaggggttgagactgttgcaacttgatcatgtactactctctggaaattatgggtatctttctaagcaactgagatgggtgtcttggcaagggtttgctttaaaatatatacctaacaactttgatctgaaaggtgtaattgcaattgatttcaaacacagtagtcttagactactctggaaaaaaccccaggttttgcagtgtttaaaaatcctcaatcttagtcattcaaagtacttgatagaaacccctgacttttcaggactacctagtctcgaaaaactcattcttaaagattgtccaagtttgtgcaaggtacaccaatccattggagatcttcgggatcttctattgattaatttgaagaattgtacaagcctaagcaatctccccagagagatgtataaactgaaatctttgaaaactctcatcctgtctggttgtttgaagattgacaaattagaagaagatatagtgcaaatggaatccttgacaactctaattgctgaaaatattgctgtgaagcaagttcccttttcaatagtaagctcaaaaaGCATTGGATATATATCTCTATGTGGATATGAAGGACCGTTACGTATTCTTATTCCTTCTATTATTTGGTCTTGGATGTCACCAAGAATGAATCCTCTATCTCGCATTCATTCTATTCCTGGCACTTCATCTCTAGGTCCCATGGATATGCAGAATAATGATTTGGGTGATCTAGCACTATTGTTTAGCAACCTTTCAAACCAAAGAAGTGTCTTGATGCAATGTGACACAAAGTTTCAACTATCTAAACAATTAGGAACTATTCTGGATTTTACTAAGTCAGAACTAACATCATATACATCACAAGTTTTGAAGCATTCTTTGGAGTCTTATTTGATCGGCATTGGAAGTTATGCACAAGGCTTGAATAGTCTCAGCAGGAGCATATCGGAGGGATTGGCAACCAATGAATCTTGCGATGATTTTCTTCCGGGAGACAATTATCCTCATTGGTTGGCATATACGGGTGATGGACATTCGGTGTATTTCACTGTGCCAGAAAATTGTTGCATGAAGGGAATGACTTTGTGTGTTGTTTATTTGTCAACCCCTGAAAACACAGCAACTGAATGTCTTACTAGTGTCATAATGGTCAATTACACAAAGTGCAACATTCAGATATTCAAACGAGACACAGTAATTTCCTTTAATGATGTAGATTGGCAGTGCATAATATCACATTTGGGACTTGGAGACGAAGTGGAGATTTTTGTAACTTTTAGGCATGGATTGGTGGTCAAGAAGATGGCTGTCTATCTCATGTATGGTGAATCAGTACTATGA 2988 0.1426 MSSSSSSNSGWIYDVFVSFRGEDTRKTFVSHLDAALSNAGINTFIDYRLEKGAEIVAQLVRAIQGSRMSLIVLSLDYASSRWCLDELVKVRQCDRTDGQMVVPIFYDVYPSDVRHQTGAFGERFKALVDKCLLQGMHHQCSSWRDALTTVANLAGCNSRNFRSDGELVDQIVEDIFRKLDMDLLTITEFPVGLESRVQQVIDFINHQSGRGCVVGIWGMGGSGKTTIAKFIYNQIRLRFKRRGFIEASNRGHIDLQEKLLSDVLRTKVKVHSIAMGISMIEKRFCGERTLIVLDDVTEFAQLKALCGNCKWIGVGSVVVITTRDVRLLKLLEVDYVYKMEEMDENESLELFSQHAFREEKPSEDFNELARNVVAYCGGLPLALEVLGSYLIKRTKKVWESVLLKLEKIPNYQVQKILRISFDGLSDPLEKDIFLDVCCFFIGKDRAYVTEILNGCGLCADIGITVLIERSLIKVEKNNKLGMHPLLREMGREIICESSRIEPGKRSRLWFQKDVLDVLTRNTGTEAIQGLSLKLRFTIKDCFEAYAFVEMKGLRLLQLDHVLLSGNYGYLSKQLRWVSWQGFALKYIPNNFDLKGVIAIDFKHSSLRLLWKKPQVLQCLKILNLSHSKYLIETPDFSGLPSLEKLILKDCPSLCKVHQSIGDLRDLLLINLKNCTSLSNLPREMYKLKSLKTLILSGCLKIDKLEEDIVQMESLTTLIAENIAVKQVPFSIVSSKSIGYISLCGYEGPLRILIPSIIWSWMSPRMNPLSRIHSIPGTSSLGPMDMQNNDLGDLALLFSNLSNQRSVLMQCDTKFQLSKQLGTILDFTKSELTSYTSQVLKHSLESYLIGIGSYAQGLNSLSRSISEGLATNESCDDFLPGDNYPHWLAYTGDGHSVYFTVPENCCMKGMTLCVVYLSTPENTATECLTSVIMVNYTKCNIQIFKRDTVISFNDVDWQCIISHLGLGDEVEIFVTFRHGLVVKKMAVYLMYGESVL 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00640 995 Gene3D - 182 336 IPR027417 -
Cca05g00640 995 Pfam NB-ARC domain 194 410 IPR002182 GO:0043531
Cca05g00640 995 Gene3D - 7 181 IPR035897 -
Cca05g00640 995 ProSiteProfiles TIR domain profile. 11 179 IPR000157 GO:0007165
Cca05g00640 995 PRINTS Disease resistance protein signature 213 228 - -
Cca05g00640 995 PRINTS Disease resistance protein signature 283 297 - -
Cca05g00640 995 PRINTS Disease resistance protein signature 376 390 - -
Cca05g00640 995 PRINTS Disease resistance protein signature 685 701 - -
Cca05g00640 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 435 IPR027417 -
Cca05g00640 995 Gene3D - 341 425 IPR042197 -
Cca05g00640 995 SUPERFAMILY L domain-like 544 805 - -
Cca05g00640 995 Pfam TIR domain 13 180 IPR000157 GO:0007165
Cca05g00640 995 Gene3D Ribonuclease Inhibitor 524 746 IPR032675 -
Cca05g00640 995 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 987 - -
Cca05g00640 995 SUPERFAMILY "Winged helix" DNA-binding domain 412 518 IPR036390 -
Cca05g00640 995 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 155 IPR035897 -
Cca05g00640 995 SMART till_3 12 153 IPR000157 GO:0007165
Cca05g00640 995 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 987 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00640 Cca-Chr5 15255151 15259496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00640 13 731 WRKY Transcription Factor Family AT4G12020 28.937 5.07e-77 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00640 - - gmx:100806743 1358.2