Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00633 ATGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGGTAGGAGATGCTGTTTTTATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGCCTACACCTAATAATGAACCAAAGTCTGACTTTAATAGTGAAGAGGAAGTAAATGAAAACATTGAAATTCAAAAATCACAACCTATAGCTTGTAAGAGAGCCTGGATAGTTGATGTGATTGATGACCAAGGCACAAAGAACATAAAGCCACTTACGGTGAATGATGTTTGGTCGTTGTCTTCTAATGAAAGGGTTGTTGTAGAATGGAATGATGAAGACCAAGCGATTGAAGATAGTGGAGCATTGTTAAATAGGTTCTTAGGTCACCTTGCAAGGGACTAA 402 0.393 MEHKRKLKEEYGIEPWTFIQKVGDAVFIPAGCPHQVRNLKPTPNNEPKSDFNSEEEVNENIEIQKSQPIACKRAWIVDVIDDQGTKNIKPLTVNDVWSLSSNERVVVEWNDEDQAIEDSGALLNRFLGHLARD 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00633 133 Pfam JmjC domain, hydroxylase 4 42 IPR003347 -
Cca05g00633 133 MobiDBLite consensus disorder prediction 34 55 - -
Cca05g00633 133 ProSiteProfiles JmjC domain profile. 1 68 IPR003347 -
Cca05g00633 133 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 63 IPR045109 GO:0032454|GO:0033169
Cca05g00633 133 SUPERFAMILY Clavaminate synthase-like 3 71 - -
Cca05g00633 133 Gene3D Cupin 1 68 - -
Cca05g00633 133 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE ISOFORM X1 2 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00633 Cca-Chr5 14990350 14995829 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca05g00633 JmjC 6.8e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00633 K15601 - vun:114163627 107.842