Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00630 ATGGCTAATAGAAGACCATACTATGGCCTTCTTATGCTCATTGTGTTGGCCATTTGTTTTGTGCCATCTTTTGGAGACACGCATGCTCAAATTTTGATGAGGTTCAGGAGTTCCTTGTCCAATGACAGTGCCTTAAGAAACTGGGGGAACGAGTCAAATTTATGCGGTTGGAAGGGTTTGTTATGCCGCAATGGCCAAACATTTTATGGCTTGAGACTAGAGAATATGGGGCTAGGGGGGAAGGTTGATGTAGAAGCCTTGCGCGAGTTGTCAAATTTGACAAGTTTCAGTGTCATTAACAATGCATTTGAGGGTCCAATGCCTGAGTTCAAAAAGCTTGTGAGGTTAAGGGCATTGTTTCTGTCCAATAACAACTTCTCTGGTGAAATTCCGGATGATGCTTTTGAGGGCATGAGAAGGTTGAAAAGGGTATTCTTGGCAGAAAATGGCTTCACGGGTTCTATTCCTAAGTCACTTGCTAACTTGCCTAGACTTTGGGATTTGGACATACATGGGAATGGTTTTGAAGGCAACATACCAGAATTTCATCAGAAGGGCTTCAGAGTGTTAAATATGTCGCATAACCAATTGAAGGGTCAAATACCAGAAAGTCTACGCGACAAGGATCGAAGTTCATTTGCTGGCAACAAACTCCTATGTGGAAAACCTATGATACCCTGCTTCAATTATAGCATCCCCCCCCACCCCAAAGTCTCTAAATCACTGACTCCCGACCCTTATTCTCCACCTCATGAAAAGGGAAAGAACAACCACATCCttataattgtccttgtagttgtagcagtggttgtCTTTGCTTCAATAGTAGCACTTCTATTCATCCATAACCACAGGAAAAAAAGGTTGCAACCCTTAACACCAGGCAGGAAGGCAAATTCCCAGAGCAGTGCAGGCTTCAAGGAGTCACAATCCATTGATCTGACAAGTGATTTCAAGAAGGGTGGTGATGGAGAATTGAACTTTGTTAGGGAAGACAGAGGGGGGTTTAGTTTGCAGGACCTTCTTAGAGCCTCAGCTGTGGTTCTTGGTAGTGGCAGTTTTGGTTCCACCTACAAGGCCATGATTTTGAATGGACCTCATGTGATTGTGAAGAGGTTTAGGAACATGAACAACGTTGGGAAACAAGAGTTCATCGAGCACATGCAAAGGCTTGGAAGTTTGACACACCCTAATCTTCTCCCTCTTGCTGCATTCTACTACAGAAAAGAAGATAAGTTTTTGGTTTATGACTTCGGTGAAAATGGCAGCTTGGCCAGTCATCTACATGGTAGGAATAGCTCAGAACTAACCTGGTCAACCCGTTTGAAGATCATAAAAGGAGTGGCAAGGGGCTTGGCCTACCTCTATGAGAACTTCCCAGGACAAAGCCTACCACATGGTCATCTAAAGTCCTCCAATGTGGTGCTGGACCATTCCTTTGAGCCACAGTTGACAGAGTATGGCCTTGTGCCAGTGATGAACAGGAGTCATGCTCAGCAGTTCATGGTAGCCTACAAGGCCCCAGAGGTGAGCCAACATGGGAGGCCAAATGAGAAGAGTGATGTGTGGTGTCTTGGGATCCTCATTCTGGAGCTTCTCACTGGGAAGTTTCCAGCAAACTACCTGAGGCATGGGAAGGGGGGGAACAAAGCTGACCTGGCAACATGGGTGGACTCAGTGGTGAGGGAAGAGTGGAGTTGTGAGGTGTTTGATAATGACATCAAGGGAACTAGGAATGGGGAGGGTGAGATGTTGAAGCTGCTCAAAATTGGGATGTTTTGCTGTGAGTGGAGTGTGGAGAATAGGTGGGATTGGAGGGAGGCTGTGGCCAAGATTGAGGAGTTGAAGGAGAGGGATAGTGCTGATGATGAGTACTCTTCTTATGTGACTGAAGATGACTTCTCTTTCTCTGTCACTAATTGA 1923 0.4483 MANRRPYYGLLMLIVLAICFVPSFGDTHAQILMRFRSSLSNDSALRNWGNESNLCGWKGLLCRNGQTFYGLRLENMGLGGKVDVEALRELSNLTSFSVINNAFEGPMPEFKKLVRLRALFLSNNNFSGEIPDDAFEGMRRLKRVFLAENGFTGSIPKSLANLPRLWDLDIHGNGFEGNIPEFHQKGFRVLNMSHNQLKGQIPESLRDKDRSSFAGNKLLCGKPMIPCFNYSIPPHPKVSKSLTPDPYSPPHEKGKNNHILIIVLVVVAVVVFASIVALLFIHNHRKKRLQPLTPGRKANSQSSAGFKESQSIDLTSDFKKGGDGELNFVREDRGGFSLQDLLRASAVVLGSGSFGSTYKAMILNGPHVIVKRFRNMNNVGKQEFIEHMQRLGSLTHPNLLPLAAFYYRKEDKFLVYDFGENGSLASHLHGRNSSELTWSTRLKIIKGVARGLAYLYENFPGQSLPHGHLKSSNVVLDHSFEPQLTEYGLVPVMNRSHAQQFMVAYKAPEVSQHGRPNEKSDVWCLGILILELLTGKFPANYLRHGKGGNKADLATWVDSVVREEWSCEVFDNDIKGTRNGEGEMLKLLKIGMFCCEWSVENRWDWREAVAKIEELKERDSADDEYSSYVTEDDFSFSVTN 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00630 640 Pfam Leucine rich repeat N-terminal domain 29 62 IPR013210 -
Cca05g00630 640 Gene3D Transferase(Phosphotransferase) domain 1 420 635 - -
Cca05g00630 640 Gene3D Phosphorylase Kinase; domain 1 313 418 - -
Cca05g00630 640 ProSiteProfiles Protein kinase domain profile. 343 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00630 640 Gene3D Ribonuclease Inhibitor 25 185 IPR032675 -
Cca05g00630 640 MobiDBLite consensus disorder prediction 294 310 - -
Cca05g00630 640 MobiDBLite consensus disorder prediction 290 310 - -
Cca05g00630 640 Pfam Protein kinase domain 348 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00630 640 Gene3D Ribonuclease Inhibitor 186 228 IPR032675 -
Cca05g00630 640 PANTHER LRR RECEPTOR-LIKE KINASE 10 623 - -
Cca05g00630 640 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Cca05g00630 640 SUPERFAMILY L domain-like 48 207 - -
Cca05g00630 640 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Cca05g00630 640 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 623 - -
Cca05g00630 640 SUPERFAMILY Protein kinase-like (PK-like) 348 615 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00630 Cca-Chr5 14861784 14865887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00630 8 633 Receptor kinase-like Gene Family AT4G31250 45.914 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca05g00630 Pkinase 1.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00630 - - gmx:100781593 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00630 05 14861784 14865887 Cca05g00630 05 14861784 14865887 ECH