Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00624 ATGGCCGTCGAACTCATCTCAGGCTTCCCCAAGCTGGACGAACAAACGGCCATCCAAGAGGCCGCATCGGAAGGCCTCAAGGGCATGGAGCACCTGATCCGCGCCCTCTcccaccaacccacccacctcaacacccacctcaccgacGTAACCGTCTCCAAGTTCAAGAAACTCATCTCCCTCCTAAACCGGACCGGTCACGCCCGGTTCAGGCGCGCCCCGGTCCAACCCGCCCCCTCGCCGCTCCACCTCCCTCCCCCGCCCCCTCCGCCGCCGCACTTCGCGCCTCCCCCGCCGCCCGCCAGCGTCACGCTCGACTTCACCAAGCCGCACGCCCTCGCCACCACCGCCGCCAAGCCCGTCGAGCTCGAATTCTCCAAGGACACCTTCAGCGTCTCCTCCAACTCCTCCTTCATGTCCTCCGCCATCACCGGCGACGCCAGCGTCTCCAACGGCAAGCATCCGCCGTCGATCTTCCTGGCGCCGCCGCCTCCTCCTCCGAACTCCGCCGGAAAACCGCCGCCGTTCAAGAAGCGGTGCCACGACCACCGCGAACACTCCGACGACGTCTCCGCCTCCGGCAGCAAGTGCCACTGCGTCAAGCGAAGGAAAAATAGGGTGAAGAAAACGGTGAGGGTGCCGGCGATAAGTTCAAAAATCGCCGATATACCGCCGGATGAGTACTCGTGGCGGAAGTACGGTCAGAAACCGATCAAGGGGTCGCCGTACCCACGgggctattacaagtgcagcacggtgagagggtgtccagcgaggaaacacgtggagcgcgcaccagacgatccggcgatgctgattgtgacgtacgagggggagcacaggcacGCGGTTCAGGCCGCGATGCAGGAGAACGCAGCCGGGGTGGTGGGTTTGGTGTTCGAGTCAACGTAG 912 0.5406 MAVELISGFPKLDEQTAIQEAASEGLKGMEHLIRALSHQPTHLNTHLTDVTVSKFKKLISLLNRTGHARFRRAPVQPAPSPLHLPPPPPPPPHFAPPPPPASVTLDFTKPHALATTAAKPVELEFSKDTFSVSSNSSFMSSAITGDASVSNGKHPPSIFLAPPPPPPNSAGKPPPFKKRCHDHREHSDDVSASGSKCHCVKRRKNRVKKTVRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPAMLIVTYEGEHRHAVQAAMQENAAGVVGLVFEST 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00624 303 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 301 IPR044810 GO:0003700
Cca05g00624 303 SUPERFAMILY WRKY DNA-binding domain 222 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g00624 303 SMART WRKY_cls 224 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g00624 303 Pfam Plant zinc cluster domain 177 222 IPR018872 -
Cca05g00624 303 MobiDBLite consensus disorder prediction 175 196 - -
Cca05g00624 303 MobiDBLite consensus disorder prediction 78 104 - -
Cca05g00624 303 PANTHER WRKY PROTEIN 13 301 - -
Cca05g00624 303 MobiDBLite consensus disorder prediction 147 196 - -
Cca05g00624 303 Gene3D WRKY domain 211 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca05g00624 303 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca05g00624 303 MobiDBLite consensus disorder prediction 70 106 - -
Cca05g00624 303 MobiDBLite consensus disorder prediction 157 173 - -
Cca05g00624 303 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00624 Cca-Chr5 14684805 14686970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00624 1 302 WRKY Transcription Factor Family AT2G24570 61.846 3.84e-111 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca05g00624 WRKY 7.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00624 - - gmx:100127381 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00624 05 14684805 14686970 Cca05g00624 05 14684805 14686970 ECH
Cca11g02524 11 52377529 52378822 Cca05g00624 05 14684805 14686970 ECH
Cca11g00390 11 5263724 5265228 Cca05g00624 05 14684805 14686970 ECH