Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00617 ATGGATGAGTATTCTGGTAAAAGAGGTGTGGATGGTGTTGTAGTCCCTAGAAAAGGGGTGAACCATGTATTTATTGAAACTCCTAATACTAGAGATCGAAATGGTCAAACTGGAAGCCGATTTGGTTGCAATAGAACCAATCTTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAAGGTAAATCAGTGAGGTCTGCATTCCAGTCCTCTTCAAGTAGCAAGGAAGCAATTGGAAGTTCCTCCAGAATGACTAGTAATCCAGGAAAACAACTTATAAAGCCTCAAAAAACATTATCTTCTCAGTTGGAGACAGATTCATCTGAAACTAGTAGTGTACAGGATGAACCAGAATTTTCAGAGCTCATCCCTCCACCAGGAGAAATTCAGAGAGGGCCTCAAGCTGAAGGGGAAAGTACAGAGTCTAGGAATGCGATACTGATGAAAGTAGGAAGCTCCAGTGCAGTATCAAATACTAGATCACAAAGGAATTTAAATCAAAGACCCGGATTGCGTGGGCAAGAAATTAAAAGCACTGGTCCAGTGAGACCTGCGGTTTCCAGCAAGTATGGATTGAGGAACCTTAGATGCAACTCTATATCTGACGTCATCCCAGCTGGTTATTCATCTTCAGATTCAACCCATAATAGAAGGAAGGACACAATGAAAAGGGGAAACTGTGAAGGTGGAAGTAGCTCCACTGTTAGAGGGAAAAATATGACTGGGTCTTCACTGGAAAGACGGAATTCTGGCTCTAGAAATGGCATATCTATATCGGATTCAAGAAGATCTAGAAATATCCCTTCTCACCAGAACGGCAGCATGGCATCAGTAAGAACTCAAAGAACAATTAGTGGTCATACCAGGGGAAGGTTTTCTAGCCAAGGGAATGAAAACCCTGTGGCAATCAGTGAGTCCCCTGTTATTCTACCCGTTTCACCTCATTCTGGCGATCTTAATGCTACTGGCAGTTCATATCATACTTCTATGGAGACTCCTTTAAGTCACGCAAGCTCTTATAGTAGACCAGGCACTAGCAGTGAGCAGTTATGTAGTGTTATGCCTATGTCTCCTGCAGAATATGACATCAGTGATTCTCTAATAGATCGGGATAGCTTTCGACGCCACAATATGGATGGTATTGAAGAGGTAATTTTCGGTTTGAATTTATTTGACAACTTTCATCTTGTGTCTTTGCAGCAAATTCTTATGTTAGAGACTAACTTGTTCCTTAACGGATTAAACTTTTATGATCACCACAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTTTTAGCTCTAGAAGAGAGGATGGGAACAGTGAGCACAGCTCTAACGGAGGAAGTACTTGCAGAATGTCTTAAAAGAAGTATATATCACTCTGCACCTTCAGATGATGCAGATGAGAGTTTTAATGAGGATAAGGATGATATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAGTTGGGGGGCTGCAATGTGAGCATAGATTTCATGTGGTTTGCATACAGGAGTGGCTGCGCCTGAAGAACTGGTGCCCCATTTGTAAAGTATCAGCAACACCGTCCAATTCATCTTCACATCATTGA 1611 0.4184 MDEYSGKRGVDGVVVPRKGVNHVFIETPNTRDRNGQTGSRFGCNRTNLPKVAQVRSSEKGKSVRSAFQSSSSSKEAIGSSSRMTSNPGKQLIKPQKTLSSQLETDSSETSSVQDEPEFSELIPPPGEIQRGPQAEGESTESRNAILMKVGSSSAVSNTRSQRNLNQRPGLRGQEIKSTGPVRPAVSSKYGLRNLRCNSISDVIPAGYSSSDSTHNRRKDTMKRGNCEGGSSSTVRGKNMTGSSLERRNSGSRNGISISDSRRSRNIPSHQNGSMASVRTQRTISGHTRGRFSSQGNENPVAISESPVILPVSPHSGDLNATGSSYHTSMETPLSHASSYSRPGTSSEQLCSVMPMSPAEYDISDSLIDRDSFRRHNMDGIEEVIFGLNLFDNFHLVSLQQILMLETNLFLNGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALTEEVLAECLKRSIYHSAPSDDADESFNEDKDDIKCCICQEEYVVGDEVGGLQCEHRFHVVCIQEWLRLKNWCPICKVSATPSNSSSHH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00617 536 SMART ring_2 483 523 IPR001841 -
Cca05g00617 536 Pfam Ring finger domain 482 524 IPR001841 -
Cca05g00617 536 ProSiteProfiles Zinc finger RING-type profile. 483 524 IPR001841 -
Cca05g00617 536 MobiDBLite consensus disorder prediction 27 116 - -
Cca05g00617 536 MobiDBLite consensus disorder prediction 24 186 - -
Cca05g00617 536 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 528 - -
Cca05g00617 536 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 528 IPR045191 GO:0061630
Cca05g00617 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 529 IPR013083 -
Cca05g00617 536 SUPERFAMILY RING/U-box 478 528 - -
Cca05g00617 536 MobiDBLite consensus disorder prediction 134 172 - -
Cca05g00617 536 MobiDBLite consensus disorder prediction 225 301 - -
Cca05g00617 536 MobiDBLite consensus disorder prediction 206 349 - -
Cca05g00617 536 MobiDBLite consensus disorder prediction 316 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00617 Cca-Chr5 14407288 14411266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00617 362 527 C3H Transcription Factor Family AT2G15530 39.759 6.90e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00617 - - gmx:100812055 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00617 05 14407288 14411266 Cca05g00617 05 14407288 14411266 ECH