Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00610 ATGGCCAAAGGCACCGATTCCGACGAGTTCATCTTGCTCTCTAGGGTTCACTCCGGCCTCAAGCGTGAGTTCACCTTCTCCATGAAAGCCCAGTTCGAGATTTGCGCCGCCTCCTTGGGCCGGACGCGGGCTAGCAAGAACCGTCCTGACCCGTCGCTCCAGCCCGCCTCGGCCCGCAAGTGCTCCAGGAAGGCCGAGGAGCCCAAACCCCTCGAGGACTTGGTTTTCTGGCAACAAAGTGCCGCCACTGGTGGTGTGGGTGGTGGTGGAGATGAACGACAACCAAGTCCTGTTCGCGGCATCTCCCTCAAGCTCCAGGAGGAGGAGCGCGAGCACCGCATGGACTTCGTTCCCGAGGTTTTCGCCATCAACATCGACCACATTGAGGTCGACAAGGAGACCCTCGACATGCTCCACTCCCTCGGAATCAACGACCTTTTCGGCATCACCCATTTTCTTCTCCGCATTCTCTCTTTTCCGACAATCCCTTCCCTCTCCGCAATAGAATCAATATTCTCTTTTCGCCACTCGCATCACATCGTTTGCCTATCAATTTATAAAATTTCAAATGGTAGAGGTGCATGTCATGTATTGCGGCAAGGAAGAGAAGCAATGGAGTTGGGGAAAAGTTGGGGCTGTCAATTTGTGAAAACTCAGTTCCATCGTGCGGGACATTGGGGATCCCTGTCTTTCTCAATCGCATGTAAAGGTAAAGAGAATGCTAAAGCCAGACAAATGGAAAGGCATGTGTGA 753 0.5325 MAKGTDSDEFILLSRVHSGLKREFTFSMKAQFEICAASLGRTRASKNRPDPSLQPASARKCSRKAEEPKPLEDLVFWQQSAATGGVGGGGDERQPSPVRGISLKLQEEEREHRMDFVPEVFAINIDHIEVDKETLDMLHSLGINDLFGITHFLLRILSFPTIPSLSAIESIFSFRHSHHIVCLSIYKISNGRGACHVLRQGREAMELGKSWGCQFVKTQFHRAGHWGSLSFSIACKGKENAKARQMERHV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00610 250 MobiDBLite consensus disorder prediction 43 64 - -
Cca05g00610 250 Pfam Ribosomal S17 95 147 IPR001210 GO:0003735|GO:0005840|GO:0006412
Cca05g00610 250 PANTHER 40S RIBOSOMAL PROTEIN S17 94 151 - -
Cca05g00610 250 PANTHER 40S RIBOSOMAL PROTEIN S17 94 151 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00610 Cca-Chr5 14193536 14194939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00610 94 152 Cytoplasmic Ribosomal Protein Gene Family AT3G10610 67.797 8.26e-22 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00610 K02962 - ccaj:109793441 165.236