Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00609 ATGCCGGGATTAACGTGCAACGCTTGCAACACCGAATTCAAGGATGACACAGAGCAAAAGTTTCATTACAAGTCCGAGTGGCATCGCTACAACCTCAAGCGCAAGGTGGCTGGGGTTCCTGGGGTGACAGAAGCGTTATTTATGACTAGACAATCTGTGATTGCTCAAGAGAAAAATAAATTGAGTGAAACCCCCATGCTCTATAGCTGTGGTCTTTGTGGAAAGGATTATAAAAGTTTTAAGGCTCATGCTGAGCACCTTAAATCGCGTGGCCATATGATGAGGGCTTCTGAAGGAACTAGTCATGCAGATGAGAAGGCAATAATTAAGCCACTTCCACAACGTGTTGTGAATAGGCCTCCTCCTAGAAGAGAGGCAGATAACTCTGAAAATGATGAAAGTGAAGATGAATGGGAGGAGGTTGATCCTGATGATGATATGGTTGATGATGCTGCAAAGTCCTTGACTGATTTGAATGTGAATGAGCATGGTGACAATGTTGATATGGATGAAGATGATGATGATGATTTTGAGGAGTTAGACCCTTCATGTTGCTTTATGTGCGATCAAGAGCACAAAACAATAGAAGACTGCATGGTTCACATGCACAAGCATCATGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGTCTCCTCACCTATCTTGGCCTTAAGGTCAAAAGGGACTACATGTGTCTGTACTGCAATGATAGATGTTATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGCAGCAAAAAGTCACTGTAAAGTGCATTTTGGTGATGGTGATGATGAGGAGGAGATAGAATTGGAAGAATTTTATGATTATAGCAGCAGTTATGTGGATGATCAAGGCAAGCAGCTTGTTGTTTCTGGTGATGCGGATAACAATGTAGAACTTGTTGGTGGGTCTGAACTCATAATCACTAGGAAATCTGGTGATAGAATATCAACCAGAACACTTGGTTCCCGTGAATTTTTGCGTTATTATCGTCAGAAACCTCGGCCATCACCAGCAAATTATATGGCTGTCACTGCTGCATTAGCTTCAAGATACAGGAGCATGGGTTTGACCACTGTCCAATCAAGGGAGCAAATTGTGAGGATGAAAGTCCTGAAGGAAATGAATAGGTCAGGTGTGGAGAATATGCGTACCAAGATAGCGATGAAGAGTAATGTCATCCGGAACTTGCCAAAGAATGTCCCGTATTAG 1233 0.4258 MPGLTCNACNTEFKDDTEQKFHYKSEWHRYNLKRKVAGVPGVTEALFMTRQSVIAQEKNKLSETPMLYSCGLCGKDYKSFKAHAEHLKSRGHMMRASEGTSHADEKAIIKPLPQRVVNRPPPRREADNSENDESEDEWEEVDPDDDMVDDAAKSLTDLNVNEHGDNVDMDEDDDDDFEELDPSCCFMCDQEHKTIEDCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYMCLYCNDRCYPFSSLEAVRKHMAAKSHCKVHFGDGDDEEEIELEEFYDYSSSYVDDQGKQLVVSGDADNNVELVGGSELIITRKSGDRISTRTLGSREFLRYYRQKPRPSPANYMAVTAALASRYRSMGLTTVQSREQIVRMKVLKEMNRSGVENMRTKIAMKSNVIRNLPKNVPY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00609 410 MobiDBLite consensus disorder prediction 90 149 - -
Cca05g00609 410 PANTHER ZINC FINGER PROTEIN-RELATED 1 410 - -
Cca05g00609 410 MobiDBLite consensus disorder prediction 130 147 - -
Cca05g00609 410 SMART c2h2final6 183 205 IPR013087 -
Cca05g00609 410 SMART c2h2final6 68 92 IPR013087 -
Cca05g00609 410 SMART c2h2final6 4 28 IPR013087 -
Cca05g00609 410 SMART c2h2final6 234 261 IPR013087 -
Cca05g00609 410 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Cca05g00609 410 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Cca05g00609 410 SUPERFAMILY beta-beta-alpha zinc fingers 170 236 IPR036236 -
Cca05g00609 410 MobiDBLite consensus disorder prediction 90 109 - -
Cca05g00609 410 Pfam C2H2 type zinc-finger (2 copies) 185 286 IPR041661 -
Cca05g00609 410 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Cca05g00609 410 PANTHER ZINC FINGER PROTEIN 622 1 410 IPR040025 -
Cca05g00609 410 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00609 1 410 C2H2 Transcription Factor Family AT4G31420 66.908 0.0 540
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00609 05 14169431 14172762 Cca05g00609 05 14169431 14172762 ECH