Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00581 ATGGCAGTGTTATATTCAGACGGCAAGTGCAAAAAATACACACTTCCGCTAACATATGTCATAAGGAATCAAAGTGCATCGACCGTGGCTCTCTTCAAGAGGCCTTCAGGAATTGTCCCAAGTCTATTTCCAAACAACTCCAAACATATGCCTCAGCCTGGGCCTGGGCCTATGGTGATTGTGGATAACAAGAAAAGTCTGATAATGATTCTAGCCTTTGCGTTGGGTTTCATTTCATTGATATCCTTGGTATTAGCGGTGTCCATTTTCTTCACTTATAAGCGAAAAGCTTATAGGTATACAACGTTGTACACAAGTGAGAGTCTGGGATTTACTGATGAATGTTCTTTGCGTTCATTTTCTTTCGATGAACTTGAGAAATCCACTGGAGGCTTCACGGAAGAAATAGGCAGAGGATCGTTTGGTGCGGTTTATAGAGGCACAATTGGTGTCAGTAACAAAAGTATCGCTGTCAAGAGGCTGGAGAGAATTGCTGATGAAGGGGAGAGGGAATTCCGAACTGAAATTACTGCTATTGCTCGAACACATCATAGGAATTTGGTTAAGCTCATTGGTTTCTGCATCAATGGATCCAGGAAGCTTCTTGTTTATGAGTATGTCAGCAATGGGTCTCTTGCAAGTCTTCTCTTGAAAAGTGAGAAGAAACTATCATGGGGAGAGAGACTAAAAATCGCATTGGACGTTGCCAGAGGAGTCTTGTATCTACATGAAGAGTGTGAGGTCCGTATTATCCACTGCAACATAAATCCTCGGAATATACTTATGGATGAAGCGTGGACTGCAAAGATCTCTGATTTTGGATTGGCAAGGCTTTTAAAGTCGGACCATTCGATAATGAAAAAAGAGGATGATGGCACAAGCAAGTACTTGGCACCTGAATGGCAGAAGGATGCACCGATATCAGTAAAATTTGACATTTACAGTTTCGGAATGGTACTATTGGAGATCGTGTGCCGCAGACGCAGCATAGAAATGAATGTTTCCTCGGCAGAGGAGATACTTCTTTCCAGCTGGGTATATCAATGCTTTGCAGCAGGGCAGTTAAATAAACTTGTGACAGAAGAAGGTGTAGATTGGATATTATTGGAAAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAGACAAGCCGTCTCTTCGCCCTTCAATCAAGAATGTCATCTTAATGTTGCAGGGATTGAAAGATATACCAATTCCTCCCTCTCCAGCTCACCACCCTAAATAA 1245 0.4249 MAVLYSDGKCKKYTLPLTYVIRNQSASTVALFKRPSGIVPSLFPNNSKHMPQPGPGPMVIVDNKKSLIMILAFALGFISLISLVLAVSIFFTYKRKAYRYTTLYTSESLGFTDECSLRSFSFDELEKSTGGFTEEIGRGSFGAVYRGTIGVSNKSIAVKRLERIADEGEREFRTEITAIARTHHRNLVKLIGFCINGSRKLLVYEYVSNGSLASLLLKSEKKLSWGERLKIALDVARGVLYLHEECEVRIIHCNINPRNILMDEAWTAKISDFGLARLLKSDHSIMKKEDDGTSKYLAPEWQKDAPISVKFDIYSFGMVLLEIVCRRRSIEMNVSSAEEILLSSWVYQCFAAGQLNKLVTEEGVDWILLERMVKVGLWCVQDKPSLRPSIKNVILMLQGLKDIPIPPSPAHHPK 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00581 414 SUPERFAMILY Protein kinase-like (PK-like) 112 397 IPR011009 -
Cca05g00581 414 Pfam Protein tyrosine and serine/threonine kinase 132 393 IPR001245 GO:0004672|GO:0006468
Cca05g00581 414 Gene3D Transferase(Phosphotransferase) domain 1 207 406 - -
Cca05g00581 414 ProSiteProfiles Protein kinase domain profile. 130 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00581 414 Gene3D Phosphorylase Kinase; domain 1 95 206 - -
Cca05g00581 414 PANTHER S-RECEPTOR KINASE-LIKE PROTEIN 2 411 - -
Cca05g00581 414 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
Cca05g00581 414 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00581 Cca-Chr5 13420460 13421704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00581 40 409 Receptor kinase-like Gene Family AT4G18250 35.401 1.97e-64 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca05g00581 PK_Tyr_Ser-Thr 7.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00581 - - ccaj:109787952 813.913