Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00580 ATGGGAGAGGTTGCAGTGATGCACTCTGAGCCTCTGCAGTTTGAGTGCAATGACATTAAACACATGACCGAGAAGGAAGTGTATCCTTCAGAATCAAATGCAGAGCACTTACCTGGAGAAGAATTAAGTCAATCTATGGATCACAAAGATATCAATGACTTGCGAGAGAAAGGATACATGGAGCATGGATGTCAACATTACCGGAGAAGATGCCGTATCAGAGCCCCCTGTTGTAATGAGATTTTTGATTGTCGCCATTGTCACAATGAGGCAAAAAATGATATAAACATTGATCAGAAGCATAGACATGACATTCCCCGCCACCAAGTCAAACAGGTGATTTGTTCACTTTGTGGAACCGAACAAGAGGTTCAGAAATACTGTATAAATTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGAACATGCAAGCTTTTTGATGATGATATCTCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGAAGCGAGAATTTTTTCCATTGCTATAAGTGTGGTTGTTGCTACTCAACTCTGCTTAAAAATAGTCACCCCTGCGTAGAAGGAGCAATGCATCATGACTGCCCTGTCTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCACTGTCATGCCATGTGGACATACAATGCACAAGAGCTGCCTGAATGAAATGAGAGAACATTTCCAGTATGCGTGCCCTCTCTGCTCGAAGTCAGTCTGTGATATGTCAAAGGTTTGGGAGAAATTTGACATTGAGATTGCTGCTACACCAATGCCTGAGCCATATCAAAACAAAATGGTTTGGATCCTAAGTGCCCGAACTGCAAATCCTACAACACACGACAAACAAGAGGCTGAGGAAGTGGCAACGATTATTCATTGGTGGAATTTGGACCGCAAGATGAACCACATTCAAAGGGATAGAACAATGTTTCCTGTGTTGATTTGGTGTTGTTGGAGCCACTTGATGGAATTGCCCCTAGAGGTTTTCGTACAAGATATCGATTATCTTGTCACAATAATGATGCAACTACATTTTCATCGTTGGGGAAATGATCCTCGCATCATTCGGCAAAGATAG 1101 0.4214 MGEVAVMHSEPLQFECNDIKHMTEKEVYPSESNAEHLPGEELSQSMDHKDINDLREKGYMEHGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDQKHRHDIPRHQVKQVICSLCGTEQEVQKYCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVTVMPCGHTMHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKFDIEIAATPMPEPYQNKMVWILSARTANPTTHDKQEAEEVATIIHWWNLDRKMNHIQRDRTMFPVLIWCCWSHLMELPLEVFVQDIDYLVTIMMQLHFHRWGNDPRIIRQR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00580 366 SMART ring_2 200 242 IPR001841 -
Cca05g00580 366 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Cca05g00580 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 245 IPR013083 -
Cca05g00580 366 Pfam Ring finger domain 199 242 IPR001841 -
Cca05g00580 366 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 20 281 - -
Cca05g00580 366 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Cca05g00580 366 CDD RING-H2_Pirh2 199 243 - -
Cca05g00580 366 Pfam Zinc-ribbon 247 277 IPR039512 -
Cca05g00580 366 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Cca05g00580 366 MobiDBLite consensus disorder prediction 27 46 - -
Cca05g00580 366 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 20 281 - -
Cca05g00580 366 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Cca05g00580 366 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Cca05g00580 366 SUPERFAMILY RING/U-box 199 248 - -
Cca05g00580 366 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00580 Cca-Chr5 13397617 13402046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00580 62 272 C2H2 Transcription Factor Family AT3G18290 38.249 9.49e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00580 K10144 - gmx:100803569 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00580 05 13397617 13402046 Cca05g00580 05 13397617 13402046 ECH
Cca05g00580 05 13397617 13402046 Cca03g01507 03 33693865 33696931 PCT