LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g00574	ATGGAGATTCTGTTGTTGCATACTGCAGCTCCCTCTCTGTCTACTGGAACCTCTTCCAGCTTGGGATCTGCTCAGTTCAGAGAGAAAGCAGGTTCCAAGCAATTGAAAATGGGAAATCGGAAGACAGAAGAAGAAAGGATTGAAAGAGTAATTCGGGGTCTTTTAAAACTTCCTGACAATCGAAGATGCATCAACTGCAATCTTTTGGGACCACAATATGTGTGTACAACTTTCTCGACATTTGTCTGCACAAATTGCAGTGGGATACATCGAGAGTTTACGCATAGAGTAAAATCCGTGTCAATGGCTAAATTTACTCCAGAAGAAGTCACAGCCCTTCAATCAGGTGGCAATGAGAGAGCAAAGCAGATTTATTTTAAAGAATGGGATCCTTTGCGTCATTCTTACCCTGATTCAAGTAACATGCACAGACTTCGAGATTTCATTAAGCGTGTCTATGTGGAAAGAAAATTTTGTGGTGAAAGTTGTAGTAGCAGTCTTCCTAAGATTAAAATGAATGAGAAGGAGGAGTCCTATGCAAGTAAGAAGAGTAGTACATTTCGTCTTGAGTTCAGAGGTCTTAATTCAAGTCCTGGTCCAAGAAATGATGACGCGAGTTTCAGATATTTATATGATGAAAGCAGAAGTCCTAAATATACACAAAAGTATTCAAGGCATGGTGGCCAAGCCAGAAGTCCAATAAAATTTGAAGTTGTTGATGACAGGTTAAAAGATGAGGAGCGTAGAAGTCGCAGGCTTTCAAATATAGAATCAAAGCTAAAAAATATTTCAATTGATGGTAAGAGGAGTGTGGAAATAACCCCACTCCCTATTCCACGTCCTTTGGGAGATATATTAAAAGAGAATGCTCCATCTCTACAAGTCACACATTCTGGTGGTGGGGGTTCTGTTGAGGAAAATCCATCCGAACAAAAAGCTAATAATCCAGAAAGCATCATTGATCTGAGTACCGAGTCTCAGGATTCTCATGCTGCTGTTGGAGTTGGACAAGAAGCACCACATGCAACACAATCCAATGAAAGTAACTGGGCCGTATTTGATACTTCAACAGAGAACAATAATCCTAAACCTCCAAATACAAATACCATGAAACCTACAACAGAGGCAGCATCTGAAGCAGCAACACCTGCAAAAAATCCTATAGACCTTTTACTTTTTGAATTATCAGGCCCCGTGACTCCAGCGACTGGTGGCATGTCACAAGTCCAAAGTGGTGATAACAATGATCCAAATCCAGCAACTACAACAGTAGAAAATGCTAGTATTTGGGACTTACCAACTACTTCAACAGGGCAGACAACTGCACCACCCAACAATACTAGTGTTTGGTCATTTCCACCAACCCCAGCCACTGAGTTAGCACAACCTTCTAATGAAGTTCCTCCACATACTGAAGTTTCACATGCACATAAACCATCAAGCATGCAATACCTTCCTTCTGTATCGGCAGGTTGTAGTTCAACCACACAACCAAATACTGAAGCTTCACATGCACATAAACCATCAAACATGCAATATCTTCCTTCTGTATCGGCAGGTTTTAGTTCAACCACACAACCAACAAATTCACCACTCAAACATGTAGCTTCAAATAATCAGGCTCCTACTAAAAATGACTCTTCATGTGCTGTTGAATTATCTTCTCAAACTACCTCAAAACCTACTCAAGAAATTATGCTTGACGTTGGCTCCCATCTCAGTAAAGTAGAAACCGGGTCAAGTGGAAGACAGGCACTTCCAGAGGACCTTTTTACATCAAGCTTCTTATCTGGCCCTGCACCACTTGCAAGTTGGATGAATGTTCAACCTCAAGGCATGGGATATGGCATGCAGTATTATCAACCTCCCTCAGCCCTTCCTTCTGTACCAATGACAGCAAACCCCTTTGAATTAACTGATGGAAGAAGTCTAATCCACGCCTCATCGCTTCCTTGTATGGCATCTTTGCATGGTGTACCGCCAACTGTATCACCCAGAACAGGATTAATTCATGCTTCAAGCGTTGGGTCTTTGGTGTCTCAGTCCCCATGTTATGGATCCCCAATTTCTATGGGTGTGTACATTGATCAAATTAATAAAGAGGAGCAATCCACAGGACCACAAAGAACTCAGAGCTTCAACAGTATGACTGCTTTTGAATCTCTAGACCCCATTCAACAGTCGAATAGGGCATACACGAACCCCAAAACTGCACATTGCTTCTCCAACACAAGTGGAAACCCATTTGACTAG	2253	0.4177	MEILLLHTAAPSLSTGTSSSLGSAQFREKAGSKQLKMGNRKTEEERIERVIRGLLKLPDNRRCINCNLLGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFTPEEVTALQSGGNERAKQIYFKEWDPLRHSYPDSSNMHRLRDFIKRVYVERKFCGESCSSSLPKIKMNEKEESYASKKSSTFRLEFRGLNSSPGPRNDDASFRYLYDESRSPKYTQKYSRHGGQARSPIKFEVVDDRLKDEERRSRRLSNIESKLKNISIDGKRSVEITPLPIPRPLGDILKENAPSLQVTHSGGGGSVEENPSEQKANNPESIIDLSTESQDSHAAVGVGQEAPHATQSNESNWAVFDTSTENNNPKPPNTNTMKPTTEAASEAATPAKNPIDLLLFELSGPVTPATGGMSQVQSGDNNDPNPATTTVENASIWDLPTTSTGQTTAPPNNTSVWSFPPTPATELAQPSNEVPPHTEVSHAHKPSSMQYLPSVSAGCSSTTQPNTEASHAHKPSNMQYLPSVSAGFSSTTQPTNSPLKHVASNNQAPTKNDSSCAVELSSQTTSKPTQEIMLDVGSHLSKVETGSSGRQALPEDLFTSSFLSGPAPLASWMNVQPQGMGYGMQYYQPPSALPSVPMTANPFELTDGRSLIHASSLPCMASLHGVPPTVSPRTGLIHASSVGSLVSQSPCYGSPISMGVYIDQINKEEQSTGPQRTQSFNSMTAFESLDPIQQSNRAYTNPKTAHCFSNTSGNPFD	750

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g00574	750	PANTHER	ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN	37	750	-	-
	Cca05g00574	750	MobiDBLite	consensus disorder prediction	13	27	-	-
	Cca05g00574	750	CDD	ArfGap_AGFG	48	158	-	-
	Cca05g00574	750	PANTHER	ARFGAP/RECO-RELATED	37	750	IPR044820	GO:0005096
	Cca05g00574	750	MobiDBLite	consensus disorder prediction	402	563	-	-
	Cca05g00574	750	MobiDBLite	consensus disorder prediction	339	375	-	-
	Cca05g00574	750	Gene3D	Arf GTPase activating protein	37	167	IPR038508	-
	Cca05g00574	750	Pfam	Putative GTPase activating protein for Arf	49	159	IPR001164	GO:0005096
	Cca05g00574	750	MobiDBLite	consensus disorder prediction	476	563	-	-
	Cca05g00574	750	SMART	arf_gap_3	48	166	IPR001164	GO:0005096
	Cca05g00574	750	MobiDBLite	consensus disorder prediction	292	375	-	-
	Cca05g00574	750	MobiDBLite	consensus disorder prediction	292	331	-	-
	Cca05g00574	750	SUPERFAMILY	ArfGap/RecO-like zinc finger	47	159	IPR037278	-
	Cca05g00574	750	PRINTS	HIV Rev interacting protein signature	79	96	IPR001164	GO:0005096
	Cca05g00574	750	PRINTS	HIV Rev interacting protein signature	97	118	IPR001164	GO:0005096
	Cca05g00574	750	PRINTS	HIV Rev interacting protein signature	60	79	IPR001164	GO:0005096
	Cca05g00574	750	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	48	177	IPR001164	GO:0005096
	Cca05g00574	750	MobiDBLite	consensus disorder prediction	402	469	-	-
	Cca05g00574	750	MobiDBLite	consensus disorder prediction	13	41	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g00574	Cca-Chr5	13309047	13332392	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca05g00574	48	158	C2H2 Transcription Factor Family	AT4G05330	35.345	6.81e-13	68.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g00574	-		-	ccaj:109788832	1377.84