Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00571 ATGGAGCGGCCTGGGAGCTTAAACGGCAGTCAGCATGTTATAGAAATAGCTGGGAGTGCCGATGCTTCCACATCGTCTGCCTCATATCTTGATAGACATTCTAATGGTGGAGATGCAATGCAGCATGAAGAAAGAATGAGCGGTGCAAGGATGCCTCTTTCTCAGCCTTCGATTTTAGCTACTAGTGTATCTAATGGATCAAATAGTAGGAATTCCTCGTTCATAAGACGTGGGGATACTCGGCGGAATAGGAGTCCTGTGCATTCGGGGTTATGGATATCTATTGAGCTGGTCCTCTTAGTGAGCCAGATAGTTGCATCTATCGTTGTTTTGTCCTTGTCAAGGCATGAGCATCCGCGTACACCATTGTTTCAATGGATCATTGGTTATGCTTCTGGATGTGCTGCTACCCTCCCTTTGCTATATTGGCGTTCCAGAACTGGTGGTGGCGAAGATGGTCAGGCTGCTGTTGTGTCCTCCCGAAGCAATCAAACTTCAGTATTGATGAATAGAAGAATGAAGACACTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCTTCTGAGGAAGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATATGTCACAAAACAGAGGGGCAACTTCTGAATCCATTAATGCTTTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAATGGCGAAGGCAACTCAGGTGCTGTTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAGGAACGTGTGATATCTGGAGAAGATGCGGTTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGACGAGTTGAGAGAATTGCCTTGCTCTCATCTTTTCCACAAAGACTGTGTCGATAAATGGTTGAAAATAAATGCATTGTGCCCTCTTTGCAAGAGTGATGTTGGTGAGAACTTAACAGGATCAGTTTCTGTAGAAGATGCTAGCCAACAACGCACTGATAATGGCCTCACAAATACCTCAGTAATGGTGGGTAACTCATCACCTATTTATGAAACAGATGAAGCCTGCACAGGCAATGTGAGTTCCTATACAATAAACTGTATTTCTCTCTCTCGTAACAAGAAGCTCGTCTTCAAAAGGAAAAAGAAATCATCAGAAGCCCCTTTTACACATGCACACTTGTTGGCCGATAAGAGGCATAGTGATGCGGCTGATTGTTCAAGGGACGCTCATCATGGCCATAAGCTGTTTGCTATTGACATTGGGAGTTAA 1395 0.4308 MERPGSLNGSQHVIEIAGSADASTSSASYLDRHSNGGDAMQHEERMSGARMPLSQPSILATSVSNGSNSRNSSFIRRGDTRRNRSPVHSGLWISIELVLLVSQIVASIVVLSLSRHEHPRTPLFQWIIGYASGCAATLPLLYWRSRTGGGEDGQAAVVSSRSNQTSVLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSSEEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRNGEGNSGAVEGGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSDVGENLTGSVSVEDASQQRTDNGLTNTSVMVGNSSPIYETDEACTGNVSSYTINCISLSRNKKLVFKRKKKSSEAPFTHAHLLADKRHSDAADCSRDAHHGHKLFAIDIGS 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00571 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 360 IPR013083 -
Cca05g00571 464 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 144 - -
Cca05g00571 464 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 145 377 - -
Cca05g00571 464 SMART ring_2 311 351 IPR001841 -
Cca05g00571 464 Pfam Ring finger domain 311 352 IPR001841 -
Cca05g00571 464 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 145 377 - -
Cca05g00571 464 CDD RING-H2_RNF111_like 310 354 - -
Cca05g00571 464 SUPERFAMILY RING/U-box 303 358 - -
Cca05g00571 464 MobiDBLite consensus disorder prediction 54 74 - -
Cca05g00571 464 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 144 - -
Cca05g00571 464 MobiDBLite consensus disorder prediction 25 85 - -
Cca05g00571 464 ProSiteProfiles Zinc finger RING-type profile. 311 352 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00571 Cca-Chr5 13202058 13213858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00571 11 362 C3H Transcription Factor Family AT1G80400 50.777 1.70e-133 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00571 - - gmx:100778728 647.891