Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00570 ATGTTTCCGGCGGAAGAAGACGGCGGTGGCCGTGAGTACTACAAGCGAGGGCTTGGTCTGATAAAGATCAACGGCTGCCCGATCGAGCTGGTGGAGCTGGAGATCCTCCTATTCAAGGCCTTCGAGCCGATCCTCCTCCTCGGCAAGAGCCGGTTCGCGGGCGTGGACATGCGAATCCGCGTGAAGGGCGGCGGCCACACCTCGCAGATTTACGCCATCCGGCAGAGCATCGCGAAGGCCCTGGTGGCCTTTTACCAGAAGTACGTGGACGAGCAGAGCAAGAAGGAGATCAAGGACATCCTTGTCAGGTACGACCGCACCTTGCTCGTCGCCGATCCCCGCCGCTGCGAGCCCAAGAAGTTCAGCGGTCGTGGCGCCCGCGCCAGGTTCCAGAAGTCTTACCGTTAG 408 0.6127 MFPAEEDGGGREYYKRGLGLIKINGCPIELVELEILLFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFSGRGARARFQKSYR 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00570 135 Gene3D - 10 135 IPR014721 -
Cca05g00570 135 SUPERFAMILY Ribosomal protein S5 domain 2-like 13 135 IPR020568 -
Cca05g00570 135 ProSitePatterns Ribosomal protein S9 signature. 63 81 IPR020574 GO:0003735|GO:0005840|GO:0006412
Cca05g00570 135 PANTHER - 13 135 - -
Cca05g00570 135 Pfam Ribosomal protein S9/S16 15 135 IPR000754 GO:0003735|GO:0005840|GO:0006412
Cca05g00570 135 PANTHER RIBOSOMAL PROTEIN S9 13 135 IPR000754 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00570 Cca-Chr5 13168186 13169164 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00570 13 135 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 86.179 5.91e-75 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00570 K02960 - gmx:100779794 232.646