Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00568 ATGGAAAAACTTTTTGATGACTATCCTGTGCTTCATGGACATAAAGTTGAGCATTCACATGGAAGCTTTTTGATGCCACCACCACCATCAAGTCAATATGAGAGTCCTCGTTCAAGAGAACTGTTGCCCAAACCAATAGCAGGAAAGCCTTGTGAGGTTTCAAAACCAAAAGACAGTAACTCCCAATTCAAGGGGATTGCACTTGGTAGGTCAGTGGACCTTACCAAATTAAGTGATTATGATGAATTAATTGCTGAACTGGATCAGCTATTTGAATTTGGAGGTGAATTAACTTCTCCACAGAAGGATTGGCTTATTGTCTACACTGATAATGAGGGAGATATGATGCTTGTTGGTGATGATCCATGGCAGTAA 375 0.4027 MEKLFDDYPVLHGHKVEHSHGSFLMPPPPSSQYESPRSRELLPKPIAGKPCEVSKPKDSNSQFKGIALGRSVDLTKLSDYDELIAELDQLFEFGGELTSPQKDWLIVYTDNEGDMMLVGDDPWQ 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00568 124 SUPERFAMILY CAD & PB1 domains 62 124 - -
Cca05g00568 124 Pfam AUX/IAA family 102 124 IPR033389 -
Cca05g00568 124 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 64 124 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca05g00568 124 MobiDBLite consensus disorder prediction 18 59 - -
Cca05g00568 124 PANTHER AUXIN RESPONSE FACTOR 2 64 124 - -
Cca05g00568 124 Gene3D - 59 124 - -
Cca05g00568 124 ProSiteProfiles PB1 domain profile. 56 124 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00568 Cca-Chr5 13129577 13130169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00568 48 124 B3 DNA Binding Superfamily AT5G62000 57.778 2.86e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca05g00568 AUX_IAA 6.3e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00568 - - gmx:100797082 125.176