Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00564 ATGATGGATAAAGAGTGCGGTGTTCGGGTCACTCGAGCAATGGCTAGAGCCTTCGGAAGGGTTTCTGCCTCTTCAAGGCCTTCCTTTAAAAGGGAAACGAAAACCAAACcttcttcttcttcttcttcttTTGATGGCAAGAGGGTAGTAGTAGTACTTGGTGATGTTACAAACATTAGCAGAAAATCACTGAAAAAGTGTGTTGCGAGTGAGACATCCAAAGTTGAGACGAGAGGAGGTTATAAGAAGACAATCACAGAGGGAGCTTCTGGTGTCTCCACGCAAGTTTTGTCAACCCAAGAAGATGTTAGAGCAAAGTTAACCAAAGATTTGTCCACAGCATCGATGGTACAGTCACATGGCACTGTTGTATCTGAAAGACCGGAAGACAGAATGTTAGTGCAACCTTGTATGTCAAGGGGCATTAGAGGAGGTCTTATGGCGGGTTCCCTGCTTTTAATGCAGGGCTCTATGAAATCTGATGAATTCCCTAGCTCTTCATACAAAGACATTGATATAATTTCTGAGAAACTAAAACCTTCAGATGGTTTGGGCATTGTGGACATTGATTCAGTGGAGTTAAAGGATCCTCAAGTTTGGAGTTCATATGCCCCTGATATATACAAAAATATATGTGTCAGAGAGTTTGAAAGGAGATCGTTATCAAATTACATGGATGAGTTGCAGCAAGATATCAATCCAAGCATGCGGGGAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGCTTGTTCCAGACACTCTTTACCTTACAGTAAATCTCATTGATCGGTTTCTTTCTCAGAGTTTGATTCAGAAACAAAGGCTCCAATTGCTGGGTGTTACATGCATGCTGATAGCATCAAAGTATGAAGAGATGTGTGCTCCTCGAGTAGAAGATTTTTGCTTCATCACCGATAATTCGTACACAAAAGCAGAGGTATTGAAAATGGAGAGTGAGATTCTAAATGTATTGCATTTTCAATTATCTGTTCCCACCACTAAAACATTTCTCAGGAGGTTTATCCTTGCAGCTCAATATTCTTACAAGGTTTCTGATGCCGAACTGGAATTTCTGGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTGCAGTTTCTACCTTCCCTGATAGCTGCATCTGCTGTATTACTTGCCAGATGGACCCTCAACCAGTCGGAACATCCATGGAATTCAACTATGGAACACTATACAAATTACAAAGTGTCAGAGCTTAAAACTACTGTCCTTGCACTGGCAGATTTGCAACTTGATACCAAAGGCTATTGTTTGAATGCTATACGTGAAAAATATAAACAGCAAAAGTTCAAGAGTGTGGCAAATTTGTCTCCGAAACCGGTGCAGTCACTTTTCCAGGCTCAAGTATAA 1407 0.4023 MMDKECGVRVTRAMARAFGRVSASSRPSFKRETKTKPSSSSSSFDGKRVVVVLGDVTNISRKSLKKCVASETSKVETRGGYKKTITEGASGVSTQVLSTQEDVRAKLTKDLSTASMVQSHGTVVSERPEDRMLVQPCMSRGIRGGLMAGSLLLMQGSMKSDEFPSSSYKDIDIISEKLKPSDGLGIVDIDSVELKDPQVWSSYAPDIYKNICVREFERRSLSNYMDELQQDINPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQSLIQKQRLQLLGVTCMLIASKYEEMCAPRVEDFCFITDNSYTKAEVLKMESEILNVLHFQLSVPTTKTFLRRFILAAQYSYKVSDAELEFLANYLAELTLVEYSFLQFLPSLIAASAVLLARWTLNQSEHPWNSTMEHYTNYKVSELKTTVLALADLQLDTKGYCLNAIREKYKQQKFKSVANLSPKPVQSLFQAQV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00564 468 PANTHER CYCLINS 42 464 IPR039361 -
Cca05g00564 468 Pfam Cyclin, N-terminal domain 206 333 IPR006671 -
Cca05g00564 468 PANTHER CYCLIN-A2-4 42 464 - -
Cca05g00564 468 CDD CYCLIN 333 425 IPR013763 -
Cca05g00564 468 PIRSF Cyclin_A_B_D_E 8 467 IPR039361 -
Cca05g00564 468 Gene3D - 220 333 - -
Cca05g00564 468 SUPERFAMILY Cyclin-like 195 332 IPR036915 -
Cca05g00564 468 CDD CYCLIN 236 325 IPR013763 -
Cca05g00564 468 SMART cyclin_7 339 427 IPR013763 -
Cca05g00564 468 SMART cyclin_7 242 326 IPR013763 -
Cca05g00564 468 MobiDBLite consensus disorder prediction 21 44 - -
Cca05g00564 468 Pfam Cyclin, C-terminal domain 335 457 IPR004367 -
Cca05g00564 468 ProSitePatterns Cyclins signature. 237 268 IPR006671 -
Cca05g00564 468 Gene3D - 206 454 - -
Cca05g00564 468 SUPERFAMILY Cyclin-like 334 457 IPR036915 -
Cca05g00564 468 SMART Cyclin_C_2 335 458 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00564 Cca-Chr5 13000640 13007510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00564 4 464 Core Cell Cycle Gene Families AT5G25380 51.059 3.23e-144 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00564 K06627 - gmx:100777132 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00564 05 13000640 13007510 Cca03g01521 03 33836964 33841472 PCT