Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00558 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCCTCGGACCCTGTTGCTATTGATGCACCTGGAGGATTTCTGTTTGAGTGGTGGTCGGTATTCTGGGACATATTTATTGCCAGGACCAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACTCAGTTAATTAAGGCTAGAGagcaacagcaccaacaacaacaacagcaaccacagcctcagcagtcgcaacatcaacaacagcagcagcaacaacaacaacaacacatgcagatgcaacaaatgctgttccagagggctcaacagcaacagcagcagcagcaacaacaacaacaaccacaacagcagcagcaacagcaaccacagtcgcaacatcagcagccaccaccacagcaacagcaGGGTAGGGATAGGGCTCATCTCTTAAATGGTGGTACAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCACTAGCAACAAAGATGTACGAGGAAAGGTTAAAACTGCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTTGGAGACCAACTTTTGGACCCAAATCACGCCTCAATTTTGAAGTCATCTGCAGCTACCGGCCAACCTTCAGGGCAAGTATTGCATGGTACTGCTGGTGCAATGTCTCCACAAGTTCAAGCTCGTAGTCAACAATTGCCAGGGTCTACTCCGGATATAAAAAGTGAGATCAATCCTGTTTTAAATCCAAGAGCTGCAGGTCCTGAAGGATCATTAATAGCAATGCCTGGTTCGAATCAAGGTAGCAACAATTTGACTCTGAAAGGGTGGCCACTTACAGGCTTGGAGCAATTACGTTCTGGTCTACTCCAGCCACAGAAACCTTTCATGCAGGCCCAACAGCCTTTTCAACAACTTCCAATGTTGACACCACAGCATCAGCAACAGCTAATGCTAGCACAACAAAATTTGGCATCGCCATCTTCCAGTGATGATAGTAGAAGACTCAGAATGCTGCTCAATAACAGGAATATGGGTGTAAGTAAGGATGGTCTTTCAAACCCTGTTGGTGATGTAGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCTACTTTTCCGCGTAGTGAGACAGATATGCTAATGAAGTTAAAGCTGGCTCAGTTGCACCAACATCAACTACAGCAGAATGCCAATCCTCAACAGCAGCAACTTCAACAacattctctttcaaatcagcaatcacattcacaGACTTCAAATCATAACATGCATCAGCAAGATAAAATTGGGGGAGGTGGTAGTGTCAACGTGGATGGTAGCATGTCAAATTCGTTTAGAGGAAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGCATCTTCTGGTCCCGCCAATAGTTCTGGGACAGCTGGCCCCTCTCCTAGTTCAGCACCCTCAACTCCCTCAACACATACACCTGGTGATGTGATGTCAATGCCCGCTTTACCTCATAGTGGTAGTTCTTCAAAGCCATTAATGATGTTTGGTGCTGATGGCACTGGAACTCTGACATCACCTTCAAACCAGTTGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTTGATGATAATGTTGAGTCTTTTTTATCCCATGATGATACAGATCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACGTTTAATGAAATAAAATCTGAACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTTTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATTCTCTAAAACAGAAAGCTACTCTTGAAGAGCACTCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCAGGGTGTGGGATGTTGATAATCCTGGGTATTCGCTTCGTACCTTTACTGGGCATTCTTCATCTGTTATGTCACTAGATTTTCACCCAAATAAAGACGATCTTATCTGCTCTTGTGATGTTGATGGCGAGATACGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACACAAGCTTGTCGATATTCACTCAAGGGACATACAAAATCTATACATTCTGTGTGTTGGGACCCTTCTGGGGAGTTTCTTGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGAACTGGGAGTGAAGGGGAGTGTGTTCATGAGCTTAGCTGTAATGGCAATAAGTTTCACTCGTGTGTTTTCCATCCAACGTATTCTTCGCTGTTGGTTGTTGGTTGCTACGAGGCGAGTCTACATCATTTCCTTATTTTGTTTCCTATTGAATATTCATTGGAGCTCTGGAACATGACTGAGAACAAGACCATGACTCTATCCGCACATGAAGGTCTTATTGCTGCATTGGCTGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGATAAGTTTGTGAAGCTCTGGAAGTGA 2709 0.399 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQHQQQQQQPQPQQSQHQQQQQQQQQQHMQMQQMLFQRAQQQQQQQQQQQQPQQQQQQQPQSQHQQPPPQQQQGRDRAHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGTAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQPQKPFMQAQQPFQQLPMLTPQHQQQLMLAQQNLASPSSSDDSRRLRMLLNNRNMGVSKDGLSNPVGDVVSNVGSPLQAGGPTFPRSETDMLMKLKLAQLHQHQLQQNANPQQQQLQQHSLSNQQSHSQTSNHNMHQQDKIGGGGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQPASSGPANSSGTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFGADGTGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFNEIKSERASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYEASLHHFLILFPIEYSLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00558 902 CDD WD40 605 902 - -
Cca05g00558 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 771 811 IPR001680 GO:0005515
Cca05g00558 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 689 731 IPR001680 GO:0005515
Cca05g00558 902 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 902 - -
Cca05g00558 902 MobiDBLite consensus disorder prediction 418 456 - -
Cca05g00558 902 Pfam LisH 10 36 IPR006594 GO:0005515
Cca05g00558 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 689 727 - -
Cca05g00558 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 870 902 - -
Cca05g00558 902 SMART WD40_4 597 636 IPR001680 GO:0005515
Cca05g00558 902 SMART WD40_4 682 722 IPR001680 GO:0005515
Cca05g00558 902 SMART WD40_4 764 802 IPR001680 GO:0005515
Cca05g00558 902 SMART WD40_4 863 902 IPR001680 GO:0005515
Cca05g00558 902 SMART WD40_4 808 848 IPR001680 GO:0005515
Cca05g00558 902 SMART WD40_4 639 678 IPR001680 GO:0005515
Cca05g00558 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 870 902 IPR001680 GO:0005515
Cca05g00558 902 Gene3D - 579 736 IPR015943 GO:0005515
Cca05g00558 902 Gene3D - 737 902 IPR015943 GO:0005515
Cca05g00558 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 646 681 - -
Cca05g00558 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 646 681 IPR001680 GO:0005515
Cca05g00558 902 MobiDBLite consensus disorder prediction 418 537 - -
Cca05g00558 902 MobiDBLite consensus disorder prediction 89 167 - -
Cca05g00558 902 SMART Lish 8 40 IPR006594 GO:0005515
Cca05g00558 902 ProSitePatterns Trp-Asp (WD) repeats signature. 665 679 IPR019775 -
Cca05g00558 902 SUPERFAMILY WD40 repeat-like 598 902 IPR036322 GO:0005515
Cca05g00558 902 MobiDBLite consensus disorder prediction 463 519 - -
Cca05g00558 902 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Cca05g00558 902 MobiDBLite consensus disorder prediction 89 181 - -
Cca05g00558 902 Pfam WD domain, G-beta repeat 685 722 IPR001680 GO:0005515
Cca05g00558 902 Pfam WD domain, G-beta repeat 609 635 IPR001680 GO:0005515
Cca05g00558 902 Pfam WD domain, G-beta repeat 865 902 IPR001680 GO:0005515
Cca05g00558 902 Pfam WD domain, G-beta repeat 643 678 IPR001680 GO:0005515
Cca05g00558 902 Pfam WD domain, G-beta repeat 767 801 IPR001680 GO:0005515
Cca05g00558 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 604 635 IPR001680 GO:0005515
Cca05g00558 902 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 902 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00558 Cca-Chr5 12763591 12782241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00558 683 901 Miscellaneous Gene Families AT5G08390 24.554 3.78e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Cca05g00558 WD40 0.081 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00558 - - gmx:100779972 1248.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00558 05 12763591 12782241 Cca03g01529 03 33926383 33931064 PCT