Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00547 ATGGGGCCATTTGGAGGAATATCCGAAGATGTCAAAGGAAGAATTAAATGTTATACACAAGATTGGTCTTCTGCAATCACTTGTGGCATCAGGATATTGGCCCCAACTTTCTACATATTCTTCGCTTCTGCTCTTCCTGTTATTGCTTTTGGAGAGCAACTTAACAGGGACACAGATGGAAGCTTGAGCACAGTGGAAACATTGGCATCAACTGCTATTTGTGGAATTATCCACTCAATATTTGGTGGCCAGCCTTTGTTGATTTTGGGAGTTGCTGAACCAACTGTTATAATGTACACTATTTTATATGAGTTCTGCAAAAGTAGGCCAGAACTAGGTGCCAAGCTTTTTCTGCCTTGGGCTGCTTGGGTTTGTGTCTGGACAGCATTCATGCTTATTTTGCTTGCAATTTTCAACGCCTGCAATGTTATCTCGAGGTTCACAAGAATTGCAGAGGAGTTATTTGGCATGTTAATTACTGTCCTTTTCTTTCAAGAGGCTATAAAGGGACTTATAGGCGAGTTTGGAACACCTAAGACTGAAAATCCTTCGTCAGAGGAATATCAATTCCATTGGCGATATACAAATGGACTACTTGCAATCATTTTCTCTTTTGGAATAATTTTCACTTCCATAATGAGTAGAAGAGCAAGAACATGGAAATATGGAGCAGGGTGGCTACGAGGTTTGATTGCTGATTATGGAGTTCCAATGATGTTAGTGATTTGGACTGCACTATCTTATACCCTACCAGGCAAAGTTCCATCAGCTGTTCCTAGAAGGTTGATTTGTCCTCTTCCATGGGAATCTGCCTCTCTCTACCACTGGACAGTAGTAAAGGATATGATGAAGGTGCCCATGGCTTATATCTTGGCAGCATTTATTCCAGCAGTGATGATAGCAGGTTTATACTTTTTTGATCACAGTGTGGCTTCTAAGATGGCTCAACAGAAGGAATATAACCTTCAAAAACCATCTGCTTACCACTATGACATTTTGCTGCTGGGTATAATGACTCTGATCTGTGGTCTTCTTGGCCTTCCTCCATCAAATGGTGTCCTTCCTCAGTCCCCTATGCATACAAAGAGTTTGGCAGTTCTTAGGAGGCAGTTGATGCGAAAGAAGGTGGTAAAAAAAGCCAAGGAATGCATTAAGGAACAAGGAAGCAGCACTGAATTATATGGAAAGATGGAAGCTGTGTTCGTAGAAATGGATACTGCACCTACAGCTAAAGAGTTGGAGAATTTGAAGGATGCTGTAATGAAGCCTATTGAAAAGGATGGTGCAAAGACAAACTTTGATCCGGAAAAACACATAGATGCTTATATACCTGTCCGGGTTAATGAGCAAAGAATGAGTAACTTGTTACAGTCTCTCCTGATTGGTCTATCAATTTTTGCCGTTTATATCATCAAAATGATTCCTACTTCAGTTCTGTGGGGATATTTCGCATACATGGCAATTGATAGTCTCCCAGGGAATCAATTCTGGGAAAGGATATTGCTTCTTTTCATCCCACCAAGCAGACGCTACAAAATTTTGCAAGGTTCTCATGCTTCATTTGTGGAGTCAGTGCCATTCAAGACGATAGCTGCATTCACAATGTTCCAGTTTGTGTATTTCTTAATCTGCTATGGAGTGACATGGATACCTATAGGAGGAATACTTTTCCCATTACCTTTCTTCTTTCTCATTACTGTAAGAGAGTATTTTCTTCCAAAGCTATTCAAGCCTGATCATCTTCAAGAGCTAGATGCTGCTGAGTACGAGGAAATTGTTGGTGCTCCACATGTTATGGCACTAGGGGACAAAGATTCTGAAAGTGAAAAGAGCGTAGATGATTATTATGATGCAGAGATATTGGATGAGATGACAACTCACAGGGGAGAATTGAAGCTTAGAACTGTAAGCCGAAATAATAGTAGAAGCTTCAGTCACAGCTTCAGTGAAGACAGGCACCATTAG 1965 0.4076 MGPFGGISEDVKGRIKCYTQDWSSAITCGIRILAPTFYIFFASALPVIAFGEQLNRDTDGSLSTVETLASTAICGIIHSIFGGQPLLILGVAEPTVIMYTILYEFCKSRPELGAKLFLPWAAWVCVWTAFMLILLAIFNACNVISRFTRIAEELFGMLITVLFFQEAIKGLIGEFGTPKTENPSSEEYQFHWRYTNGLLAIIFSFGIIFTSIMSRRARTWKYGAGWLRGLIADYGVPMMLVIWTALSYTLPGKVPSAVPRRLICPLPWESASLYHWTVVKDMMKVPMAYILAAFIPAVMIAGLYFFDHSVASKMAQQKEYNLQKPSAYHYDILLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAVLRRQLMRKKVVKKAKECIKEQGSSTELYGKMEAVFVEMDTAPTAKELENLKDAVMKPIEKDGAKTNFDPEKHIDAYIPVRVNEQRMSNLLQSLLIGLSIFAVYIIKMIPTSVLWGYFAYMAIDSLPGNQFWERILLLFIPPSRRYKILQGSHASFVESVPFKTIAAFTMFQFVYFLICYGVTWIPIGGILFPLPFFFLITVREYFLPKLFKPDHLQELDAAEYEEIVGAPHVMALGDKDSESEKSVDDYYDAEILDEMTTHRGELKLRTVSRNNSRSFSHSFSEDRHH 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00547 654 PANTHER BORON TRANSPORTER-LIKE PROTEIN 3 653 - -
Cca05g00547 654 Pfam HCO3- transporter family 445 535 IPR011531 GO:0006820|GO:0016021
Cca05g00547 654 Pfam HCO3- transporter family 3 179 IPR011531 GO:0006820|GO:0016021
Cca05g00547 654 Pfam HCO3- transporter family 189 372 IPR011531 GO:0006820|GO:0016021
Cca05g00547 654 PANTHER ANION EXCHANGE PROTEIN 3 653 IPR003020 GO:0005452|GO:0006820|GO:0016020
Cca05g00547 654 Gene3D Helical hairpin bin 14 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00547 Cca-Chr5 12393749 12401030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00547 3 643 Antiporters AT4G32510 68.237 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00547 K24194 - gmx:100808880 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00547 05 12393749 12401030 Cca05g00547 05 12393749 12401030 ECH
Cca03g01536 03 34052144 34057372 Cca05g00547 05 12393749 12401030 ECH
Cca05g00547 05 12393749 12401030 Cca03g01536 03 34052144 34057372 PCT