Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00546 ATGAAAATGTTTAGGATGTGTGGTGGCATCAATAATGGTTATTATAACGAAGATGTTGATGAGAGAGAACTTGACAAAGGAGAAGATGGAAGCAAATACAGCCTCACAGGCATTCTTCTTCCCTCTCTTGGTGCCACAGCTGCCCGTAATGGTAGTCGTAGACTAAAGCTTGGTCGTTACATTATTTCCCCAGCTAATCATCAATATAGACTATGGAGCAAGTTTCTAGTGATATTGGTTTTCTACACTGCTTGGATGTGTCCATTTCAATTTGGTTTCCTTGAGAGATCAAAAGGTGCATTGGCTGTAATAGACAATGTTGTAAATGGGTTTTTTGCCATTGACATTGTTCTCACCTTTTTTGTTGCTTACCTTGACAAGTCTACTTATTTGCTCATTGACAACCATAAGCTCATTGCTTTGAGATATGCCAAATCTTGGTTGGTTTTTGATGTCATTGCAACAACTCCTTATGAAGTTGTTCATACTATTTTGCCACCCTCTCTTCAAATATATAGTTACTTCAGTATTCTTCGCCTTTGGCGCCTCCATCGAGTTAGTGCCATGTTCGCAAGATTGGAAAAGGATAGGAATTACAGCTACTTTTGGGTGCGTTGTTGCAAGCTTACTTGTGTTACTTTATTTGCAGTGCATGCTGCTGCATGTTTTTTCTATTTTCTTGCTGCACGAGATAACCCAGAATCTACGTGGATTGGAGTTATTCCTGCTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTACGTGGATTGGAGTTATGCCTGCTGCCATTGACCAAAATCTATGGGGAAAATATGTAGTAGCGATATATTGGTCCATAATGACTCTTTCATCAGTTGGTTATGGAGATCTACATCCTGTAAATACAAAAGAAATGGTATTTGAGATTTTGTATATGCTCTTTAATCTTGGACTCACATCATATATAATAGGCAACATGACCAACTTGGTTGTTCACTGGACTGATAAAACTAAAAAATATAGAGACACTGTCCAATCTGCCTCAAATTTTGCCAAAAGGAATCAATTGCCTGTTCGTTTGCAAGAACAAATGTTTGCCCATTTGCTTATGAAGTATAGAACGGATTTAGAAGGGTTGCAACAACAAGAAATCATAGATTCCCTTCCAAAAGCCATTCAGTCTAGCATCTCACACTACCTATTTTATCCGCTTGTTGACAAAGTGTATTTGTTTCATGGAGTGTCAAATGACCTACTTTTTCAACTAGTTACAGAGATGAAAGCTGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAAAATGAAGCACCAACAGACTTTTATATATTTGTTACTGGAGCTGCTGTAAGATATTATATTCCTTTTTGTTTTTATGTTGTTGGAGAAGCAAAGCCAGGAGATGTAGTAGGAGAAACGGGAGTATTATGTTATATGCCACAACTATTTACAGTTCGAACCAAGAGATTGAGCCAGATTTTACGCCTAAATCGAACCATCTTTCTAAATCTTACTCAATCAAATGTTGGAGATGGAACAATGATCATGAACAATTATATTCAACATTTACATGAATTTGGGGGTCCATTGATAAGAGGAATTTTGGAAAATGTAGAGGGAATGTTGGCCAGGGGCAAAATGGATTTGCCTATCAGTTTATTGTTTGCAGTTAGTAGAGATGATGATTTATTATTGCGTAAACTACTGAAGAAGGGTTCAGATCCAAATGAAGTAGATAAGAATGGAAAGACAGCATTGCATTTGGCAGCTTTTAAAGGCAATAATCATTGTGTATCTTTGCTTCTTGAACATGGAGCTAAAGTCAACATCCAAGACTCAGATGGAAATGTCCCACTTTGGGAAGCAATAAAAGGTGGACATGAATCTATCATGAAACTTCTTATAGACAATGGTGCAGACATATCATGTGCAGATGTTGGTCATTTTGCATGCACTGCTGTAGAGCAAAATAACTTAGAATTACTCAAGGGCATTGTTCAATGTGGTGGGGACGTGACACAATCCACAGGCAATGGAACTACTGCACTCCATGCTGCAGTGTGTGAAGGAAATGTTGAAATAGTGAAGTTCCTTCTAGAGCAAGGAGCAGATATTGATAAACAAGATAATACTGGCTTGACTCCAAGGTTTTGTGCAGATCAACAATGCCATGAAGAAATACTAAAGATATTCCAAAATGTTCAACAAAAAACAACAAACATAATCCCTAGTTCTTATGTTGGGAGGTGTCAAAGTGAACCCACAATGCCCGCCATTTCCCAAGGAAGCGAGCCACCTAATCAAGAACTAACATGGTTCAATAATCATCAAAGAAGAAGGGCCAGCCCTTTCCATAATTCCTTTTTTGGGATATTGTCAAATGCAAATTATGATAAAAAAGATTTCACAACTGCAACTCACAACAGTCACACTAGAGAAGAATTACGAGCCAGAGTAACACTTAGTTGTCCAGAGAAAGGTGAATGTGCTAAAAAACTTGTGTTTTTGCCAAATTCTATTGAAGAATTGCTACATATTGGTGCTAAAAAGTTTGATTTCTATCCCACCAAAATATTGACTAAAGAAGGAGCTGAAGTTGAAGACATAAATGTCATCAGAGATGGTGATTTTCTTATTTTTGTATAG 2721 0.3613 MKMFRMCGGINNGYYNEDVDERELDKGEDGSKYSLTGILLPSLGATAARNGSRRLKLGRYIISPANHQYRLWSKFLVILVFYTAWMCPFQFGFLERSKGALAVIDNVVNGFFAIDIVLTFFVAYLDKSTYLLIDNHKLIALRYAKSWLVFDVIATTPYEVVHTILPPSLQIYSYFSILRLWRLHRVSAMFARLEKDRNYSYFWVRCCKLTCVTLFAVHAAACFFYFLAARDNPESTWIGVIPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTWIGVMPAAIDQNLWGKYVVAIYWSIMTLSSVGYGDLHPVNTKEMVFEILYMLFNLGLTSYIIGNMTNLVVHWTDKTKKYRDTVQSASNFAKRNQLPVRLQEQMFAHLLMKYRTDLEGLQQQEIIDSLPKAIQSSISHYLFYPLVDKVYLFHGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDFYIFVTGAAVRYYIPFCFYVVGEAKPGDVVGETGVLCYMPQLFTVRTKRLSQILRLNRTIFLNLTQSNVGDGTMIMNNYIQHLHEFGGPLIRGILENVEGMLARGKMDLPISLLFAVSRDDDLLLRKLLKKGSDPNEVDKNGKTALHLAAFKGNNHCVSLLLEHGAKVNIQDSDGNVPLWEAIKGGHESIMKLLIDNGADISCADVGHFACTAVEQNNLELLKGIVQCGGDVTQSTGNGTTALHAAVCEGNVEIVKFLLEQGADIDKQDNTGLTPRFCADQQCHEEILKIFQNVQQKTTNIIPSSYVGRCQSEPTMPAISQGSEPPNQELTWFNNHQRRRASPFHNSFFGILSNANYDKKDFTTATHNSHTREELRARVTLSCPEKGECAKKLVFLPNSIEELLHIGAKKFDFYPTKILTKEGAEVEDINVIRDGDFLIFV 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00546 906 Pfam Cyclic nucleotide-binding domain 449 533 IPR000595 -
Cca05g00546 906 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 4 243 - -
Cca05g00546 906 Pfam Ion transport protein 70 356 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca05g00546 906 ProSiteProfiles Ankyrin repeat profile. 606 638 IPR002110 GO:0005515
Cca05g00546 906 SUPERFAMILY Ankyrin repeat 578 758 IPR036770 -
Cca05g00546 906 Gene3D - 72 350 - -
Cca05g00546 906 Pfam KHA, dimerisation domain of potassium ion channel 843 905 IPR021789 -
Cca05g00546 906 ProSiteProfiles KHA domain profile. 843 906 IPR021789 -
Cca05g00546 906 PANTHER POTASSIUM CHANNEL AKT1 4 243 IPR045319 GO:0005249|GO:0006813
Cca05g00546 906 CDD CAP_ED 429 533 IPR000595 -
Cca05g00546 906 SUPERFAMILY cAMP-binding domain-like 354 548 IPR018490 -
Cca05g00546 906 PRINTS EAG/ELK/ERG potassium channel family signature 105 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca05g00546 906 PRINTS EAG/ELK/ERG potassium channel family signature 297 314 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca05g00546 906 PRINTS EAG/ELK/ERG potassium channel family signature 323 334 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca05g00546 906 PRINTS EAG/ELK/ERG potassium channel family signature 82 89 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca05g00546 906 PRINTS EAG/ELK/ERG potassium channel family signature 116 125 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca05g00546 906 PRINTS EAG/ELK/ERG potassium channel family signature 341 350 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca05g00546 906 ProSiteProfiles cAMP/cGMP binding motif profile. 429 547 IPR000595 -
Cca05g00546 906 ProSiteProfiles Ankyrin repeat region circular profile. 639 670 - -
Cca05g00546 906 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 278 905 - -
Cca05g00546 906 SUPERFAMILY Voltage-gated potassium channels 64 350 - -
Cca05g00546 906 ProSiteProfiles Ankyrin repeat region circular profile. 606 637 - -
Cca05g00546 906 Gene3D - 575 758 IPR036770 -
Cca05g00546 906 Gene3D Jelly Rolls 397 550 IPR014710 -
Cca05g00546 906 ProSiteProfiles Ankyrin repeat profile. 703 735 IPR002110 GO:0005515
Cca05g00546 906 PANTHER POTASSIUM CHANNEL AKT1 278 905 IPR045319 GO:0005249|GO:0006813
Cca05g00546 906 Pfam Ankyrin repeats (3 copies) 578 669 IPR002110 GO:0005515
Cca05g00546 906 Pfam Ankyrin repeats (3 copies) 678 756 IPR002110 GO:0005515
Cca05g00546 906 ProSiteProfiles Ankyrin repeat region circular profile. 703 735 - -
Cca05g00546 906 ProSiteProfiles Ankyrin repeat profile. 639 671 IPR002110 GO:0005515
Cca05g00546 906 SMART cnmp_10 429 545 IPR000595 -
Cca05g00546 906 SMART ANK_2a 606 635 IPR002110 GO:0005515
Cca05g00546 906 SMART ANK_2a 670 699 IPR002110 GO:0005515
Cca05g00546 906 SMART ANK_2a 573 602 IPR002110 GO:0005515
Cca05g00546 906 SMART ANK_2a 703 732 IPR002110 GO:0005515
Cca05g00546 906 SMART ANK_2a 639 668 IPR002110 GO:0005515
Cca05g00546 906 PRINTS Ankyrin repeat signature 719 733 IPR002110 GO:0005515
Cca05g00546 906 PRINTS Ankyrin repeat signature 607 622 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00546 Cca-Chr5 12382104 12390183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00546 17 905 Ion Channels AT2G25600 55.543 0.0 958
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00546 K21867 - gmx:100808832 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00546 05 12382104 12390183 Cca05g00546 05 12382104 12390183 ECH
Cca05g00546 05 12382104 12390183 Cca03g01537 03 34060248 34065793 PCT