Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00543 ATGCTTGCTCTTCCCTCTCTTCGATCTGCGTTTCTTCGCTCGATTAAAGAACCTTCTGACATTGGATGGAAATTTAGGTGTATAGTAGGGTGTTCATTTTGCCAGCAATACAATGCAACGTGTAATTTTCCTGTAAGCGAGGTGATGGCAAAGAAGATTCCAACGGTGTTTATGGATGTGTCCGTAGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTTTGATGTTGCTCCAAAGACTGCTGAAAATTTCCGCGCACTATGTACAGGAGAAAGGGGAGTTGGTCCAAATACTGGCAAATCATTGCACTACAAGGGTTCTTTCTTCCATCGGATTGTAAAAGGCTCCATTGCCCGGGGTGGTGATTTTGTCAATCGAAATGCAGGGACTGGTGGAGAAAGCATATATGGTTCCAAGTTCCCCGAGGAGTCACCTAGATTAAAGCATGATGCTCCAGGCCTTCTATCCATGGCAATTGCTGATCGTGACACTCTTGGTTCTCATTTTATCATTACTTTTAAAGCTGATCACCATCTTGATAGGAAACATGTAGTCTTTGGCAAGCTTGTGCAAGGGCATGATGTCTTGAAGAAAATCGAACATGTGGGTGATGAAGAAGGACTTCCAAGTGTAACTGTTAAAATAATTAATTGTGGTGAACATAATGAGGATGGAAAGAAGATAAATAGATCAAAAGTGGGACGAGATGGATCTTCTGAAACCAATAGTCATGAAGTGGTGCTTAATGGAAAAAACAAAAGATCTTCCGGAGAAAGAAGGAAAAGGAGAAAGTACTACTGGTCAGAATCTGATAGCTCCTCAGGTTCTGACATGAAATCTTCAGAAAGTGATAGTGATTCTGAGTCAGATGTCTCTTCATCATCTTACTCAAGTTCCTCCAGCAATGACAAATGgagaaagagaaagaggtctaggaaagataaaaatagacgtggaaaaagaagagacaaacaccgagacaagagaagaagaaaACAAGACAAGAGGTCAAAGTGTAGATCAAGAAGGGAATTGGCTAGTCATACCGATTTAGATAGTGAAAGTAAGAGTGAGAACAGCTCTGATGGCGGAAGTTGTGGTGCTCAAGTGAAAGATCAGAAGCATAAAGATCATTCTCGGAGACATGCTGAAGGTCACTCTTCCTTAGTTGTGGAGAAAGAATTACCTCCTATGCACCTTAAAAAGAGGGAGAAACGGGATATGCTAGGGGAGGAAGAATTTCCAAAGGAAAATGGAGAGCGGCATAGCAACAGCAATGGGACCAAATATAGATCTGACAAAAGTGAAGGGAGGCAGCCTGACATAATGGATGATCAACAAGGAAAATCTAGGAGTCAAAGTATGAGCCCGAAGCGAATCATGAGTAAGAGTATGAGTATTAGTCCCAGGAATGGGAACCAAAGCCCAAGCATTAGCCCAAAAAGGAGGTTGAGCAGAAGTCCAAGTGGTTGTAGAAGCCCTTGCCCCCCATTACAGAGGATTCTGAGAAGAAATCCTATTAGAAGCATAAGTAGGAGTCCAAACAGAAGAAGCATCAACAAAAGCCCAGTGATAGGCACGAAGGGGATAATTGTTAGTAGAAGCCCATTGAAAACTCACAATCATAGAAGTGTTGGTAGAAACCCTGTGAGAACTCGAAATCATAGAAGTTTCGGCAGAAGCCCTATGAGAACTCGCAATAATAGAAGTGTCAGTAGAACCCCTGTGGGATCCTGTGGTCATAGAAGTGTTGATGCAAGCCCTGTAAAATCCCTTTCTCGAAGTAGTCCACCCAGAGCACCATCACAAAGATCAATCAGCAGAAGTCCTGTGAGAACTCGCAATCATAGAAGTATCAGTAGAAGCTCTGTAAGATCCCTTTCTCGGAGCCATAGTAGGAGTCCACCCAGAGCACCATCACGAAGATCAATCAGCAGAAGTCTTGTGAGAACTCGCAATCATTGA 1971 0.4115 MLALPSLRSAFLRSIKEPSDIGWKFRCIVGCSFCQQYNATCNFPVSEVMAKKIPTVFMDVSVDGDPVERMVFELFFDVAPKTAENFRALCTGERGVGPNTGKSLHYKGSFFHRIVKGSIARGGDFVNRNAGTGGESIYGSKFPEESPRLKHDAPGLLSMAIADRDTLGSHFIITFKADHHLDRKHVVFGKLVQGHDVLKKIEHVGDEEGLPSVTVKIINCGEHNEDGKKINRSKVGRDGSSETNSHEVVLNGKNKRSSGERRKRRKYYWSESDSSSGSDMKSSESDSDSESDVSSSSYSSSSSNDKWRKRKRSRKDKNRRGKRRDKHRDKRRRKQDKRSKCRSRRELASHTDLDSESKSENSSDGGSCGAQVKDQKHKDHSRRHAEGHSSLVVEKELPPMHLKKREKRDMLGEEEFPKENGERHSNSNGTKYRSDKSEGRQPDIMDDQQGKSRSQSMSPKRIMSKSMSISPRNGNQSPSISPKRRLSRSPSGCRSPCPPLQRILRRNPIRSISRSPNRRSINKSPVIGTKGIIVSRSPLKTHNHRSVGRNPVRTRNHRSFGRSPMRTRNNRSVSRTPVGSCGHRSVDASPVKSLSRSSPPRAPSQRSISRSPVRTRNHRSISRSSVRSLSRSHSRSPPRAPSRRSISRSLVRTRNH 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00543 656 Gene3D - 42 223 IPR029000 -
Cca05g00543 656 MobiDBLite consensus disorder prediction 448 488 - -
Cca05g00543 656 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 58 221 IPR002130 GO:0000413|GO:0003755
Cca05g00543 656 MobiDBLite consensus disorder prediction 565 579 - -
Cca05g00543 656 MobiDBLite consensus disorder prediction 371 447 - -
Cca05g00543 656 MobiDBLite consensus disorder prediction 341 359 - -
Cca05g00543 656 MobiDBLite consensus disorder prediction 224 241 - -
Cca05g00543 656 MobiDBLite consensus disorder prediction 542 564 - -
Cca05g00543 656 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 57 222 IPR002130 GO:0000413|GO:0003755
Cca05g00543 656 MobiDBLite consensus disorder prediction 307 340 - -
Cca05g00543 656 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 49 436 - -
Cca05g00543 656 SUPERFAMILY Cyclophilin-like 47 224 IPR029000 -
Cca05g00543 656 MobiDBLite consensus disorder prediction 508 524 - -
Cca05g00543 656 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 111 123 IPR002130 GO:0000413|GO:0003755
Cca05g00543 656 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 74 89 IPR002130 GO:0000413|GO:0003755
Cca05g00543 656 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 155 170 IPR002130 GO:0000413|GO:0003755
Cca05g00543 656 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 183 198 IPR002130 GO:0000413|GO:0003755
Cca05g00543 656 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 170 182 IPR002130 GO:0000413|GO:0003755
Cca05g00543 656 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 49 436 - -
Cca05g00543 656 MobiDBLite consensus disorder prediction 289 303 - -
Cca05g00543 656 MobiDBLite consensus disorder prediction 224 656 - -
Cca05g00543 656 MobiDBLite consensus disorder prediction 622 648 - -
Cca05g00543 656 MobiDBLite consensus disorder prediction 590 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00543 Cca-Chr5 12252937 12259269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00543 72 218 U-box Gene Family AT5G67530 39.597 3.89e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00543 K09566 - gmx:100801588 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00543 05 12252937 12259269 Cca05g00543 05 12252937 12259269 ECH