Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00539 ATGGAGTCTCCAGAACCTTCCAATAACAACAATGGCAGTTCTTCTGCCTCTCCTCTAAACGGCAATCACAACGATTATGAGAAATCCTCTAAAGATTCGCCCTTTTATAGATACGTGAATGCTTTATCTCCAATACCCACCAAGGCTCCTCATGCGGCACAAGGTTTTCTAGGGCTCAATTCTCCACCCCTTGTATTCAAGTCTCCACGTATTTCTCACCGTGAAACACAGCCCATGGAAAGGCCCCAAGGCACTCAGTCACTCAGTGGAGATATATATCAAAGTGAAAATGGAGGCAACAGTCTTGGTGTAGCTGCTGGAGATTCTGGAAAATCAAATTCTGAACAGCCACTGCCAGAGAGGTTTGTAGCTGACACTCAGAAGGTTTTTGACTCCAAGAATGATACAAATGCTCAAAACAACAGTTCTCTCCTGTCTATTGATGAATATTTGGCTGATCCTGGGGATATTGATCAAGTGTATTCAGATGACAATGGTGTGGAACAATCTACAGATGCAGCTGAATCATCACTAAATGGCCTAACTCAGTTAGATAAAAATATATCAAAGGATGGTCCTGGTGATAAAAATAAGGAATCTTTGGGTTTGTCAGAGGATTCTAATAAGGTTTATCAAGAAAAATCAGCATATGGTCAAGAAACTGAAAAGATTGAAGGGGAGAAAAATGATGTTCAATGTGCTTCTCAAGATCCCACAAAGTTAGAGTCCAATTTAGCTGCAGGTGATTTTGATAAACAATATTGTGATGATCCACATCCCCAGGATGTTCAAGGGTGTGAAGATTACAATGAGACGGTGTCAACCTCACATGTAACTGCAGAGAATATCTCGCAAGAAGGTTCAGAGGCTACTCTAAAGTACCATGGCATTCGTAGACGCTGCCTACAATTTGGGGAAGCTGCTTCCAATGCTCTTGGAAGTAACAAGCCTCATGTGAAACTGAATGCAACTTCAAACGAAATGAAAATGGTCAAGTTGTCTGAACCTGTCACTTCCTTGTGTCCTCAGCGAGGTAGTGGAAACTTACCTTTGACAGAGACAGGAATTGGGGTTCATTCAAATGGTTTCATAAATGCTATGCCAACTGGTCAGGCTGCAACTACGGGTGTGAGATTGTCAGAGAGTTTACAAGTGATGAAATCCGCACCTTCAATAAGGTTACAAAGAATGGAGAATGTGAAGAGATCCATACTTTCATCTAGTTCTGGCAGGCCATCATTAGTTGAAACAAAAAATGAGAGCCGTGAAATTGTTACTTCAGTATCTTCAGATGCTGAAAATTCCGAGGATTTCAACCAACCTCCTAACCCCCGCAAGAAAAAGATGAGAACATCAGTCATTGCTGATAACAATGGCTGTAAGCGGTGCAACTGTAAGAAGAGTAAATGCTTAAAACTTTATTGTGATTGTTTTGCTATTGGAGCCTACTGTACCAACCCCTGTGCTTGCCAAGGCTGTTTAAACAGACCAGAGTATGCAGAGACAGTTTCTGAGACTAAAAAACGAATTTTAGCTCGTAACGCGAATGCGTTTGCTCCCAAGATTGTAAAGGCTAATGCCGATAATATGGAGGATGAAAATCTGACGACACCATCATCAGCAAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAAAGTGTCAGAAAAAATATTGTGAATGTTATCAGGCTAATGTGGGATGCTCTAGTGGATGTCGATGTGAGGGATGCATGAATGTCTATGGCAAGAAAGATTATGTTTCAATGGAAAAACGTGCTTTGAGTAAAGAAAGGGTGAGCAACATTGTTCAAACAGGATCAGACAGCACATCTCACAATAAACTGGAAATGGTGGCAAGCAAGACAAATTATGATGCCTTTTCACCTATAACGCCATCATTTCAATTCTCTGACCAAGGCAAGGAGGCTGCAAAATCCAGAGTTTTCTCCTCAAACTGTCTACCATGCCCTGAATCCAATGTCAGCATGATTGCATCTAGTGCAAACTACACTAGTTCTTCAGAGAAATTACACAGAAGGCATGCACTTCTGGAAACAAATGAGATGTTGACAACCGCCCCCTATGATTCGCAAAATAATTGCAACAATGTTGACATGATGGATCAGTATACTCCTGTGTCTCATCCTGAGCCATTGTCTGGCGCTTCATCAGTCTTCTCTGGAGCTAATGAGTGGACAAATATTCCTCAATCCCGACTCTCCCATGGAAGTATTCGCCAGTTACCTAGCGGCTCTCTTCGTTGGCGTAGTTCCCCATTGACCCCAAGCACTGGAGTAGGTGAAGCACATTATTTACAGTGTCCTGAATCAGATAACAGGCTCTTTGACATTCTAGAAAATGAAACCCCTGATACACTGATGCAAGCTTCAACTCCCATGAGGTCTGTAAAAGTAAATTCCCCTACCCAAAAACGAGTTTCTCCTCCCCAGATTCGTTATCATGGGTTTGGATCAAGCTCCTCTGGAGGACTCAGACCTGGCAGGAAATTTATGTTGAAATCCGTACCTAGTTTCCCTCCATTGTCTCCTTGCGTTGATTCCAAAGGCAATGACAAAGAAGATTTGGGTGACAGTGAGAGCAAGTGCAGCAACTCAGCTAAAGAATGCCCTCAATGA 2637 0.4228 MESPEPSNNNNGSSSASPLNGNHNDYEKSSKDSPFYRYVNALSPIPTKAPHAAQGFLGLNSPPLVFKSPRISHRETQPMERPQGTQSLSGDIYQSENGGNSLGVAAGDSGKSNSEQPLPERFVADTQKVFDSKNDTNAQNNSSLLSIDEYLADPGDIDQVYSDDNGVEQSTDAAESSLNGLTQLDKNISKDGPGDKNKESLGLSEDSNKVYQEKSAYGQETEKIEGEKNDVQCASQDPTKLESNLAAGDFDKQYCDDPHPQDVQGCEDYNETVSTSHVTAENISQEGSEATLKYHGIRRRCLQFGEAASNALGSNKPHVKLNATSNEMKMVKLSEPVTSLCPQRGSGNLPLTETGIGVHSNGFINAMPTGQAATTGVRLSESLQVMKSAPSIRLQRMENVKRSILSSSSGRPSLVETKNESREIVTSVSSDAENSEDFNQPPNPRKKKMRTSVIADNNGCKRCNCKKSKCLKLYCDCFAIGAYCTNPCACQGCLNRPEYAETVSETKKRILARNANAFAPKIVKANADNMEDENLTTPSSARHKRGCNCKRSKCQKKYCECYQANVGCSSGCRCEGCMNVYGKKDYVSMEKRALSKERVSNIVQTGSDSTSHNKLEMVASKTNYDAFSPITPSFQFSDQGKEAAKSRVFSSNCLPCPESNVSMIASSANYTSSSEKLHRRHALLETNEMLTTAPYDSQNNCNNVDMMDQYTPVSHPEPLSGASSVFSGANEWTNIPQSRLSHGSIRQLPSGSLRWRSSPLTPSTGVGEAHYLQCPESDNRLFDILENETPDTLMQASTPMRSVKVNSPTQKRVSPPQIRYHGFGSSSSGGLRPGRKFMLKSVPSFPPLSPCVDSKGNDKEDLGDSESKCSNSAKECPQ 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00539 878 MobiDBLite consensus disorder prediction 78 120 - -
Cca05g00539 878 MobiDBLite consensus disorder prediction 403 439 - -
Cca05g00539 878 MobiDBLite consensus disorder prediction 163 186 - -
Cca05g00539 878 MobiDBLite consensus disorder prediction 800 824 - -
Cca05g00539 878 MobiDBLite consensus disorder prediction 403 450 - -
Cca05g00539 878 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 860 IPR044522 GO:0003700
Cca05g00539 878 MobiDBLite consensus disorder prediction 64 233 - -
Cca05g00539 878 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 545 579 IPR005172 -
Cca05g00539 878 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 461 496 IPR005172 -
Cca05g00539 878 MobiDBLite consensus disorder prediction 800 878 - -
Cca05g00539 878 MobiDBLite consensus disorder prediction 1 24 - -
Cca05g00539 878 MobiDBLite consensus disorder prediction 216 230 - -
Cca05g00539 878 MobiDBLite consensus disorder prediction 129 147 - -
Cca05g00539 878 ProSiteProfiles CRC domain profile. 459 582 IPR005172 -
Cca05g00539 878 MobiDBLite consensus disorder prediction 1 31 - -
Cca05g00539 878 SMART CXC_2 542 583 IPR033467 -
Cca05g00539 878 SMART CXC_2 458 499 IPR033467 -
Cca05g00539 878 MobiDBLite consensus disorder prediction 854 868 - -
Cca05g00539 878 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 1 860 - -
Cca05g00539 878 MobiDBLite consensus disorder prediction 189 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00539 Cca-Chr5 12158684 12165006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00539 790 850 CPP Transcription Factor Family AT3G22780 43.077 9.63e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Cca05g00539 TCR 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00539 K21776 - gmx:547664 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00539 05 12158684 12165006 Cca05g00539 05 12158684 12165006 ECH
Cca05g00539 05 12158684 12165006 Cca03g00113 03 1540837 1543180 PCT