Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00536 ATGGTTGGTGAGCATGGAACTCAGCTCTCTAGTGGGCAGAAGCAACGTATTGCCATTGCAAGAGCAATCCCGAAAAATCTGAAAATTCTACTTCTAAAAGAAGCCACAAGTGCACTTGACGCAGAGTCTGAAAGAATAGTGCAAGAAGCCCTAGACAGGATCATGGTCAACAAAACTAATGTTGTTGTGGCACATCGCTTGAGCACAGTGAGGAATGCTGATAACATTGTTGTCATTCATGGAGGGAAAATAGTTGAGAAAGGGGATCATGTTCATCCATTGAGAGTAGTAGCTGCCACTTATTTTCAGTTTCCTTTGGTGTACCTGATCAGGCTGATCTTGAACATGAAAACTCAATCACAACCTAAAGAAAAACCACAAGAGGTTCCACTTTTCCTTCTTGCTTCCCTCAACAAGCATGAGATTCCAATTCTTCTAATTGGATGTGCAGTTGCCATAGCAGATGGTGTTATACTTCCAATATACGGGGTGCTGATTTCCAGGGCCATCAAGACATTCTAA 522 0.4234 MVGEHGTQLSSGQKQRIAIARAIPKNLKILLLKEATSALDAESERIVQEALDRIMVNKTNVVVAHRLSTVRNADNIVVIHGGKIVEKGDHVHPLRVVAATYFQFPLVYLIRLILNMKTQSQPKEKPQEVPLFLLASLNKHEIPILLIGCAVAIADGVILPIYGVLISRAIKTF 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00536 173 Gene3D - 1 124 IPR027417 -
Cca05g00536 173 Gene3D ABC transporter type 1, transmembrane domain 125 173 IPR036640 GO:0005524|GO:0016021
Cca05g00536 173 PANTHER - 126 173 - -
Cca05g00536 173 PANTHER - 1 94 - -
Cca05g00536 173 Pfam ABC transporter 3 37 IPR003439 GO:0005524
Cca05g00536 173 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 126 173 - -
Cca05g00536 173 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 1 94 - -
Cca05g00536 173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 91 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00536 Cca-Chr5 12084921 12086822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00536 2 95 Calmodulin-binding Proteins AT2G36910 64.894 3.14e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00536 K05658 - gmx:100802547 184.882