Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00535 ATGGCTGTTGGGACCATTGGTGCCATTGGAAATGGTTTGGCTTTGCCTCTCACGGTATTACCATTAGATGCTTACAAATCAGGAATTCATGAAGGTTTCATAGATGGAGTGGGTGTAGGCACAGTTGTGTTTGTTGTTTTCTGTAGTTATGGTTTCGCTGCATGGTTTGGCGCAAAGATGATAATGGAAAAATACAATGGGGGCGCGGTGATTAATGTGATTGCTGCCATGCTAACTGCTTCAATGTCTCTTGGAAAGGCATCCCCTAGCATGAGTGCTTTTGTTGCAGCCAGGCCTGAGGAACTCATATTTAATGGATTCTCTCTTCATAGACCTTGTGGCACAACTGCAGCATTAGTTGGAGAAAGTGGAAGTGGAAAGTCTACAGTTATCAGTTTGGTAGAAAGATTCTATGATCCACAGGCAGATGAAGTTCTTATTGATGGCATCAACATGAAAGAATTTCAGCTCAGCTGGATCAGAGGGAAAATTGGCCTTGTTAGGAGCTGGTGTTGTTTGCATCTAGCATTGAGGATAACTATGGAAAAGAGGGAGCAACAATTGAAGAGATAA 573 0.4276 MAVGTIGAIGNGLALPLTVLPLDAYKSGIHEGFIDGVGVGTVVFVVFCSYGFAAWFGAKMIMEKYNGGAVINVIAAMLTASMSLGKASPSMSAFVAARPEELIFNGFSLHRPCGTTAALVGESGSGKSTVISLVERFYDPQADEVLIDGINMKEFQLSWIRGKIGLVRSWCCLHLALRITMEKREQQLKR 190
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00535 190 Coils Coil 182 190 - -
Cca05g00535 190 PANTHER - 23 96 - -
Cca05g00535 190 Gene3D - 98 168 IPR027417 -
Cca05g00535 190 PANTHER - 97 167 - -
Cca05g00535 190 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 97 167 - -
Cca05g00535 190 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 23 96 - -
Cca05g00535 190 Pfam ABC transporter 106 170 IPR003439 GO:0005524
Cca05g00535 190 Gene3D ABC transporter type 1, transmembrane domain 24 97 IPR036640 GO:0005524|GO:0016021
Cca05g00535 190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 169 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca05g00535 Cca-Chr5 12080384 12084523 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00535 97 173 Calmodulin-binding Proteins AT2G36910 46.753 1.63e-16 75.1