Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00530 ATGGTACAAGCAAAGAAGTTCAGGGGTGTAAGGCAACGCCAATGGGGCTCATGGGTGTCAGAAATTCGTCACCCATTACTGAAGAGAAGGGTATGGCTAGGTACATTTGAGACAGCAGAGGCTGCAGCAAGGGCATATGACCAAGCAGCCATTTTGATGAGTGGTGAAAGGGCCAAGACCAATTTCCCTCCACCAGTGAACCAGCCTCAAGGTGCTACTTCTGCTGCACCTTGTGTGGACTCTTTCTCATCTCCCAATAATGTTAATCTTTCTGAGGATCTGAGAAGAAAGCTCAAGAGGTGCTGCAAAGACCCTTCTCCATCCCTCACATGTCTCAGGCTAGATGCTGACAATTCCCACATTGGAGTGTGGCAAAAGGGTGCAGGGCCACACTCAGATTCTAACTGGATCATAAGGGTGGAGCTTGGAAAGAAGCATGAAGAGGGTGAGTCAAGTGTTTCAGCAGGGTCACCACCAAAAAGAGCTAGTAGTGATTTTGATGGTGATGAAGAGGACAGAATTGCCATGCAGATGATTGATGAGCTACTTAATTGGAATTACCCATGTGGTTCAAGTAATTAA 582 0.4691 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMSGERAKTNFPPPVNQPQGATSAAPCVDSFSSPNNVNLSEDLRRKLKRCCKDPSPSLTCLRLDADNSHIGVWQKGAGPHSDSNWIIRVELGKKHEEGESSVSAGSPPKRASSDFDGDEEDRIAMQMIDELLNWNYPCGSSN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00530 193 MobiDBLite consensus disorder prediction 147 172 - -
Cca05g00530 193 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cca05g00530 193 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 192 - -
Cca05g00530 193 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Cca05g00530 193 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Cca05g00530 193 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Cca05g00530 193 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cca05g00530 193 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cca05g00530 193 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Cca05g00530 193 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cca05g00530 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00530 Cca-Chr5 11992620 11994155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00530 1 186 AP2-EREBP Transcription Factor Family AT1G15360 56.281 4.58e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca05g00530 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00530 - - gmx:100784305 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00530 05 11992620 11994155 Cca05g00530 05 11992620 11994155 ECH
Cca03g01566 03 34392103 34393364 Cca05g00530 05 11992620 11994155 ECH
Cca11g02171 11 47583939 47585675 Cca05g00530 05 11992620 11994155 ECH