Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00527 ATGGCATTTGAAGTAAGAGATGGTGTTGGTGATTGGCCTTTAGAGATTTTTAAAGACTGTGCTTCTACAAGTGAAATTGATGGAAATACAGTTTCTTTTACATTTCAAGAGTCTCAAGAAGAACCACTGCTTGAAGCCAATAATATTTATGATGAAGTTCCTTATGAAGGGCAAATGTTTAATAGCTATGATGAAGCTTATGAATTTTATTATGCATTTGCACGAAAAAATGGCTTTTCGATTAGACGTGAACATACTTACAAATCTAGTAAGAATCAAACTGAGGAGAATCCATTGGGTATTTATAAAAGGGAATTTGTTTGTCATCGTGCTGGTTCTGTTAAACAGCGCAAATTTATTGAAGATGAAAGTCAAAGAAAACAGAAAAGTTCAAGATGTAATTGTGGGGCAAAAATGTTGATTAACAAAAAGACAATTGACTTTGAGGAAAAATGGGTGGTTAAATATTTTTATAATTACCACAACCATGATTTATTAGATGATAAAGAGGTTCAGTTTCTTCTTGCATATCGAAACATCCCAATTATTGATAAAAATTGTATACTGCTATTGTCAAAAGCTGGTTGCTCTGTAAGCCTCATAATAAGAGTGCTGGAGTTAGAGAAAGGAATTGATCCAGGAAATCTGCCATTTTTAGAGAAGGATATTAGGAATTTTATTCAATCTGAAAGTGGTATTGATAAAGAAAATGATGCTTCAAATCTTCTCAAATTATGCAAAAGTTTGAAAGATAGAGATAATGCCTTCCAATATGATTTCACAATAGATGAAAATAACAAATTGGAGCATATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAAGCTTTCTGA 858 0.3205 MAFEVRDGVGDWPLEIFKDCASTSEIDGNTVSFTFQESQEEPLLEANNIYDEVPYEGQMFNSYDEAYEFYYAFARKNGFSIRREHTYKSSKNQTEENPLGIYKREFVCHRAGSVKQRKFIEDESQRKQKSSRCNCGAKMLINKKTIDFEEKWVVKYFYNYHNHDLLDDKEVQFLLAYRNIPIIDKNCILLLSKAGCSVSLIIRVLELEKGIDPGNLPFLEKDIRNFIQSESGIDKENDASNLLKLCKSLKDRDNAFQYDFTIDENNKLEHIIWAFGDSIRAYEAF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00527 285 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 285 IPR031052 GO:0006355
Cca05g00527 285 Pfam FAR1 DNA-binding domain 68 166 IPR004330 -
Cca05g00527 285 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 34 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00527 Cca-Chr5 11926377 11927234 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca05g00527 FAR1 2.2e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00527 - - ccaj:109802755 558.14