Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00526 ATGGCAGTTTACCGGGACATGTCCATTTCTACATGGACTCAACAATACACCTCTAATACAGCTAACATATTTATCTCAGCTTTATCCCCTAGTCATCACAGCATATTCATCAAATTCAACTTAGTTCAGCGTATAACATCATTGATTAACAATTTCGGCACAACTCAACAGCCAACATCATATAGATCGTCATCTCCTTGCGCGCCCGGTGCACTCGAGGTTGCGCCCAGCGCGGCTCAACCCGAGAGCACCAAGGCTCTCCCGCGCCTGGCGCAATTCCCAATTAAAGACAAAAACTTATTCTATGCAAGTGAGATTGGGACCAAGTTGAAACAAACCGAAGTGGATTGTGAATACTTAAAGAGATACTGTGAGAATTTAACTGAAGAGAATAGAAGGATGCACAAAGAGCTCCAAGAACTTAGGGCACTGAAATTATCTCCACAAATGTACATGCATATGAACCCTCCCACCACTCTTACAATGTGCCCTTCTTGTGAGCGTGCTCACTCCTCTGCATCCTCCTCCTCTCCTGCCACTGGCCACTCGGCAACTGCACCAAACAATCGTAAATTGTTTGGTGCAAATATTCGACGGACAGCACCGGTTAGCACATGGCCATTTGAAGGTTCAGTCTCTCGACCATAA 648 0.4552 MAVYRDMSISTWTQQYTSNTANIFISALSPSHHSIFIKFNLVQRITSLINNFGTTQQPTSYRSSSPCAPGALEVAPSAAQPESTKALPRLAQFPIKDKNLFYASEIGTKLKQTEVDCEYLKRYCENLTEENRRMHKELQELRALKLSPQMYMHMNPPTTLTMCPSCERAHSSASSSSPATGHSATAPNNRKLFGANIRRTAPVSTWPFEGSVSRP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00526 215 SMART halz 111 154 IPR003106 GO:0006355|GO:0043565
Cca05g00526 215 PANTHER - 108 207 - -
Cca05g00526 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 108 207 - -
Cca05g00526 215 MobiDBLite consensus disorder prediction 165 189 - -
Cca05g00526 215 Pfam Homeobox associated leucine zipper 111 145 IPR003106 GO:0006355|GO:0043565
Cca05g00526 215 Coils Coil 124 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00526 Cca-Chr5 11917651 11921896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00526 101 172 Homeobox Transcription Factor Family AT2G44910 76.389 1.38e-33 120