Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00523 ATGGAAGATTCTAATCAACAGGCCAAGTCTGCTGAAAACCAGCAAAGTGAACAAGTGTGTAGTTTTTTCAGAAAACCGGTTAATAGAAAGAATATAAGGAAGCGGACTATTGATAATGAAGATAATGAGGAGGACTCAAACAAAGAAACTTCTCTATTGCATATTCAGAAGAAGACTTTAAAGCCTGACAATAAGTTGTACTTTTCCACTGGCTCTTCAAAAGCCTCTGCATGTGCTGAACCAAGTGAAGAATCTGGAAAACCAGTCTTTCAGTTCGAGTCTTCAAAAAATATTCAAGTTCAACATGATAACAAAGCAACAGCAACTCTGGAGACCGAGACTGAGTTTTCAAAAGATGCCCGTGCCATCCGTGAAAGAACACTTAAGCAAGCAGCGGAGAGTCTTAAAGAGACAAGCACAAGTTCTAAGGATGAAAAATTATATAAGGGAATTAACAATTACAAAGACTACAAGGCTGGGTTTCGTAGGGAGCAAACAATTGCTAGTGAAAAAGCTGGTGGTTCTCATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGGTTTGATTATCAACCTGACATATGTAAGGATTATAAGGAAACGGGATACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCAGGGTGGCAGTTGGACAAGGAATGGGAAGAAGCTGAGAAAGCAAGgaagatgagattggctgcaggtgaggatgcagatgaggaggggggtgctagtttgactgatgaagatgatgaagaTTCGTTACCTTTTGCATGTTTCATTTGTAGAAACGCTTTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACTTGGCATTTTTAATGTTGCTCACGAGATACGCAGGAAGATGGCTGAGGATAAAATTAAGTAA 996 0.3675 MEDSNQQAKSAENQQSEQVCSFFRKPVNRKNIRKRTIDNEDNEEDSNKETSLLHIQKKTLKPDNKLYFSTGSSKASACAEPSEESGKPVFQFESSKNIQVQHDNKATATLETETEFSKDARAIRERTLKQAAESLKETSTSSKDEKLYKGINNYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLDKEWEEAEKARKMRLAAGEDADEEGGASLTDEDDEDSLPFACFICRNAFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDKIK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00523 331 Pfam Zinc finger, C3HC4 type (RING finger) 269 311 - -
Cca05g00523 331 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Cca05g00523 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Cca05g00523 331 PANTHER ZINC FINGER PROTEIN 183 10 329 IPR039971 -
Cca05g00523 331 SMART ring_2 270 307 IPR001841 -
Cca05g00523 331 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Cca05g00523 331 MobiDBLite consensus disorder prediction 32 56 - -
Cca05g00523 331 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 10 329 - -
Cca05g00523 331 MobiDBLite consensus disorder prediction 1 56 - -
Cca05g00523 331 ProSitePatterns Zinc finger RING-type signature. 285 294 IPR017907 -
Cca05g00523 331 CDD RING-HC_RNF113A_B 268 308 - -
Cca05g00523 331 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Cca05g00523 331 Gene3D - 190 224 - -
Cca05g00523 331 MobiDBLite consensus disorder prediction 1 22 - -
Cca05g00523 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 327 IPR013083 -
Cca05g00523 331 SUPERFAMILY RING/U-box 269 312 - -
Cca05g00523 331 ProSiteProfiles Zinc finger RING-type profile. 270 308 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00523 Cca-Chr5 11841951 11845391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00523 10 331 C2H2 Transcription Factor Family AT1G01350 68.323 1.08e-162 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca05g00523 zf-C3HC4_3 3.6e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00523 K13127 - gmx:100787434 616.69