Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00520 ATGGGAAAACAGTGGTCTCTCTCCAGTGTTATGAATACCCTCTTCTTGTGTTTCTTTTTTTCTTCTGAACTAGTTATGACTAGTTTTCTAAAGGTTGGCAAAGTCTCTCCCGTGTTAGAAGGCTCTCAAATGAATTGGATTGACAGGAAGGGAATTTTCCTTGTGTCAAATAAAGGAGAATTTGGCTTTGGCTTTGTCACCACTCCAAATGACGCAACATTGTTTCTACTAGCAATTGTCCACATGGACAGCACCAAGGTGGTTTGGGTTGCAAATAGGGCACTTCCTGTCTCTAATTCAGATAAATTTGTGTTTGATGAGAAGGGCAATGTCCTTTTACAGAAAGGGTCAAGTGTGGTATGGTCTACAAGAACAAGTGGCAAGGGAGTTTCTTCAATGGAATTGAAGGACACTGGAAACTTGGTTTTGCTAGGGAGTGATAATAGAGTGATTTGGCAAAGTTTCAGCCACCCTACAGATACCTTGTTGCCAATGCAAGACTTCATTGAGGGAATGAAACTTGTCAGTGAACCTGGTTCTAACAACTTGACCTATGTTCTTGAGATTCAATCTGGCAATGTCATTCTCTCAACTGGTTTACAATCTCCACAGCCTTATTGGTCTATGCAAAAGGATAGTCGCAGAATTATCAACAAAAATGGTGATTTAGTAGCTTCAGCTACCCTTAATGCAAACTCTTGGAGGTTCTATGATGAAACAAGATCCTTGTTGTGGCAATTTGTTTTTGCTAAAGAAGCAGATGCAAACGCCACTTGGATTGCAGTTTTGGGAAGTGATGGCTTAATCACATTCTCCAATCTCCTAAGTGGAGGGTCAATTGCCTCAGCCACAAGAATACCACAAGATTCTTGTAGCACCCCAGAACCTTGTGGTCCCTATAACATATGCAGTGGTGAAAAAAAATGCACCTGTCCTTCTGTTCTTAGCTCTAGGCCTAATTGCAAACCCGGGTTTGTCTCTCCTTGTAACTCGAAAAGAACCATTGAGCTCCTCAAAGGTGATGATGGACTCAATTACTTTGCACTTGAGTTTCTTCAACCCTCTTCAAAGACTGATTTGATTGGTTGCAAAACCTATTGCAGTGCAAATTGCTCATGTGTTGCTATGTTCTTCCACAACAGTTCAGGGAACTGTTTCCTGTTGGACAGGATCGGAAGCTTTGAGAAATCTGATGAAGATTCTGGTTTTGTCTCTTACGTTAAGGTGGTCTCAAGTGATGAACACAGTGAAGAAAGTGGAAGCAGCAATATGCAAACAATAATTGTTGTGATCATTGTTATACTAACACTAATTGTGATTTCTGGTATGCTCTTTGTGGCACGTAGTTGTTTCAGGAAAAAGCAGGATTTGCCTGAGTCCCCTCAGGAGGATTCAGAAGATTACAACTTCTTGGGGAGTTTAACCGGCATGCCGATCCGTTACAGCtacagtgatctagaaactgcaacaaagggtctaTGCACTGTTCCTAAGCCACCAAGTTGTTCTGTCCTTGGTTCTAGGTTTTACTCAACTTCACTCAAATCCATGAGTGAGAATGGCACTTCTTCAGGACCATCAGATTGTAACAGTGATGCATATCTTTCTGCTAATGAACTTGAGGCTGCAAAATCTGAGATTAAGAAGTGGCATTTTTCATTTCAAAATGAACCTTTTATATCTGCTGGGACCACTCCAGCACCAAAATTGGTGATTAATTATCTTCAAGCTCTGAAATCATTTGAAGAGTCTTTAAGAGAGCAGCTTGAAAAAGCAAAGAAAAAGGAAGTTGCATTCATTGTCACATTTGCAAAACGAGAACAAGAGATAGCAGAGTTGAAGTTGGGGATGAATTTTGAACTTGTTAGATCAAATTCAACGATTCTCCATGTCTTCCCCTTCAATTCTGAGAAAAAGCGAGACGGTGTTGCTGTGAAACGGATGGACTCTGCAGTACATATACATTGGAAAGGAGCTGCGGAGATTGTTTTAGAAACTTGTACTCAATATGTTGATTCTGATGGTCACTTGAAATCTATTAAAGAAGAAAAGGTCAATCCTCACACTCACCAGCTGAAGCTTTGTGACTTTGGGAGTGCAAAAGTTTTGGTCAAAGGGGAACCAAACATATCTTACATCTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATATGGTCAGCTGGTTGTGTACTAGGTGAACTATTGCTTGGCCAGCCTCTCTTTCCTGGCGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGCACCCCAACAAGGGAAGAAATCAAGTCTAAATTCAAGTGTAAGGTGAAAAACCTTACAAAATTCAGGACTTAA 2382 0.4022 MGKQWSLSSVMNTLFLCFFFSSELVMTSFLKVGKVSPVLEGSQMNWIDRKGIFLVSNKGEFGFGFVTTPNDATLFLLAIVHMDSTKVVWVANRALPVSNSDKFVFDEKGNVLLQKGSSVVWSTRTSGKGVSSMELKDTGNLVLLGSDNRVIWQSFSHPTDTLLPMQDFIEGMKLVSEPGSNNLTYVLEIQSGNVILSTGLQSPQPYWSMQKDSRRIINKNGDLVASATLNANSWRFYDETRSLLWQFVFAKEADANATWIAVLGSDGLITFSNLLSGGSIASATRIPQDSCSTPEPCGPYNICSGEKKCTCPSVLSSRPNCKPGFVSPCNSKRTIELLKGDDGLNYFALEFLQPSSKTDLIGCKTYCSANCSCVAMFFHNSSGNCFLLDRIGSFEKSDEDSGFVSYVKVVSSDEHSEESGSSNMQTIIVVIIVILTLIVISGMLFVARSCFRKKQDLPESPQEDSEDYNFLGSLTGMPIRYSYSDLETATKGLCTVPKPPSCSVLGSRFYSTSLKSMSENGTSSGPSDCNSDAYLSANELEAAKSEIKKWHFSFQNEPFISAGTTPAPKLVINYLQALKSFEESLREQLEKAKKKEVAFIVTFAKREQEIAELKLGMNFELVRSNSTILHVFPFNSEKKRDGVAVKRMDSAVHIHWKGAAEIVLETCTQYVDSDGHLKSIKEEKVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKSKFKCKVKNLTKFRT 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00520 793 ProSiteProfiles Bulb-type lectin domain profile. 39 156 IPR001480 -
Cca05g00520 793 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 491 - -
Cca05g00520 793 Pfam Cation transport ATPase (P-type) 593 669 - -
Cca05g00520 793 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 613 690 IPR023299 GO:0000166
Cca05g00520 793 Pfam D-mannose binding lectin 87 167 IPR001480 -
Cca05g00520 793 SUPERFAMILY Protein kinase-like (PK-like) 688 783 IPR011009 -
Cca05g00520 793 Gene3D - 46 157 IPR036426 -
Cca05g00520 793 SMART serkin_6 554 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00520 793 Coils Coil 575 598 - -
Cca05g00520 793 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 3 491 - -
Cca05g00520 793 ProSiteProfiles Protein kinase domain profile. 499 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00520 793 Gene3D - 575 689 IPR023299 GO:0000166
Cca05g00520 793 Gene3D Transferase(Phosphotransferase) domain 1 690 785 - -
Cca05g00520 793 CDD B_lectin 51 158 IPR001480 -
Cca05g00520 793 SMART blect_4 45 158 IPR001480 -
Cca05g00520 793 Pfam Protein kinase domain 688 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00520 793 SUPERFAMILY alpha-D-mannose-specific plant lectins 86 209 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00520 Cca-Chr5 11768174 11777963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00520 614 684 Primary Pumps ATPases AT3G21180 69.014 8.49e-24 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Cca05g00520 Pkinase 2.5e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00520 - - gmx:100787500 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00520 05 11768174 11777963 Cca05g00520 05 11768174 11777963 ECH
Cca03g01572 03 34465346 34473324 Cca05g00520 05 11768174 11777963 ECH
Cca05g00520 05 11768174 11777963 Cca03g01572 03 34465346 34473324 PCT