Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00515 ATGAATATTACACTTTCAGTTTCAGAGTCAAGAATGTCTAAAGAAGTTATTGCTACTCCGTCAGCTGCTCCTTTTGAGTATGAGATATTGGATAGTGATGCTGAAATCCTTAGAACTGTTAAAGCCTCATCCAATAGCGCAAATCCATGGATTGAACCTGAAAGGTTGAAAATTAGACACAGAATTGGTCGTGGCCCCTTTGGTGATGTTTGGCTAGCAACTCATCATCAGTCAACCGAAGATTATGATGAGTACCATGAAGTTGCTGCTAAGATGTTACATCCACTCAGAGAGGATCATGTGAAGATTGTATTAGAGAAGTTCAATGAATTATATTTGAAGTGCCAAGGAGTTGCTAGTGTTTCCTGGCTACATGGAATTTCAATCCTAAATGGAAGGATATGCATCATTATGAATTTGTACGAGGGTTCAATTGGTGACAAGATGGCGCGACTCAAAGAGGGAAGGATTTCGTTGCATGATGTTTTAAGGTATGGAATCAATCTGGCTCAAGGTGTTATTGAACTTCACTCTAGAGGGATCCTCATTCTCAACCTTAAACCATTTAATGTTCTTCTCAATGGTAACGATCAAGCAATTTTGGGAGATGTTGGTATTCCCACTCTTTTGCTTGGCTCCTCATTCCAAAGCTCAGATATGGCTAAGAGACTTGGAACTCCAAATTACATGGCTCCAGAGCAATGGGAACCAGAGGTCAGAGGTCCTATATCCTTTGAAACAGATTCTTGGGGATTCGGTTGCACCATTGTGGAAATGTTGACTGGTAGTCAACCTTGGTATGGATGTCCTGTTAGCAGAATATTCCAGTCGGTTGTTGAAAAGCATGAAAAACCCAATATTCCAAGTGGCCTTCCTTCTTCAGTTGAGAATATCCTCAGCGGATGCTTCGAGTATGATTTGAGGAATCGCCCTTTAATGGTGGATATTCTGAGTGTCTTTCAAAGTGCTCTGAATGAACAGACCAACGATGAAGGATGGAGATACCTAGGAAATCTCAAAGTCATCCCGAAATCAGGTAGCACTGACTGCACAGAGTGGTTCCTCTCAAAGGATCATCTTCAGGTGGGTGACATGGTCCGGTCTAGAAAGCCTTTTAATTCACGCACATCTCAAAACATGAACATCCCAGAAGGAACCGTCGTTGGTTTAGAGCGTATCCCAGATAACAGGTTCCCTCTCGTGAAAATCCAAGGTATCCAAGACCCTGTCAGAATTCCCGCATCATATCTCAAACGTGTCACACTCGGCCTGGCAGCCGGCGATTGGGTACGCTTGAAGGACGAAAATGAGAAGCACTCGTCAGTCGGTATTCTACACACCATTGACCGTGACGGTAGAGTGGCTGTCGGGTTTCTTGGGCTGCAAACTATCTGGAACGGAACATCTGACGAACTTAAAATGGCAGAACCGTACTGTGTGGGCCAGTTTGTCAGGCCAAAAGCCGGCGTTTTGAGTCCTCGGTTTGAATGGCGCCGCAAAAGGGGAGGAGCCTTTGCTGCTGGGAGGATCTCATGGATTCTTCCAAATGGGTGTTTGGTGGTCAAGTTTCCAGGAATGCTGCCCTTTGGCAATGAGCCAAGCACCTACTTGGCTGATCCATCTGAGGTTGAAGTGGTGGAGTTTAGGACATGTCCTGGTGTGATAGAAAAGTACCAACATGTGGAGGATCATCACTGGGTAGTTAGGCCTCTTCTGATTGCATTTGGTCTATTCACTGCTTTCAAATTTGGCATATCAATTGGAAACAAAGTGAGGAGGAACAACAAGGTCAGTGCAGTAGAAAGTGAAAGTCAACATGTTGAAGCTAAGAATGTCAACTCTGCTATAACTGCAAAATCTCCCAGTGCTGTGAATTCAGGCAACAAAACATGGGTTGTTCCTGCGGTTGCTAATATGCTTTTTAAGGAAGGTGGTGGTAACACAACCAATGGTCGGTAG 1959 0.4421 MNITLSVSESRMSKEVIATPSAAPFEYEILDSDAEILRTVKASSNSANPWIEPERLKIRHRIGRGPFGDVWLATHHQSTEDYDEYHEVAAKMLHPLREDHVKIVLEKFNELYLKCQGVASVSWLHGISILNGRICIIMNLYEGSIGDKMARLKEGRISLHDVLRYGINLAQGVIELHSRGILILNLKPFNVLLNGNDQAILGDVGIPTLLLGSSFQSSDMAKRLGTPNYMAPEQWEPEVRGPISFETDSWGFGCTIVEMLTGSQPWYGCPVSRIFQSVVEKHEKPNIPSGLPSSVENILSGCFEYDLRNRPLMVDILSVFQSALNEQTNDEGWRYLGNLKVIPKSGSTDCTEWFLSKDHLQVGDMVRSRKPFNSRTSQNMNIPEGTVVGLERIPDNRFPLVKIQGIQDPVRIPASYLKRVTLGLAAGDWVRLKDENEKHSSVGILHTIDRDGRVAVGFLGLQTIWNGTSDELKMAEPYCVGQFVRPKAGVLSPRFEWRRKRGGAFAAGRISWILPNGCLVVKFPGMLPFGNEPSTYLADPSEVEVVEFRTCPGVIEKYQHVEDHHWVVRPLLIAFGLFTAFKFGISIGNKVRRNNKVSAVESESQHVEAKNVNSAITAKSPSAVNSGNKTWVVPAVANMLFKEGGGNTTNGR 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00515 652 Pfam Protein tyrosine and serine/threonine kinase 56 318 IPR001245 GO:0004672|GO:0006468
Cca05g00515 652 PANTHER OS06G0639500 PROTEIN 12 646 - -
Cca05g00515 652 PANTHER OS06G0639500 PROTEIN 12 646 - -
Cca05g00515 652 ProSiteProfiles Protein kinase domain profile. 56 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00515 652 CDD STKc_PknB_like 57 311 - -
Cca05g00515 652 SUPERFAMILY Protein kinase-like (PK-like) 53 321 IPR011009 -
Cca05g00515 652 Gene3D Phosphorylase Kinase; domain 1 23 141 - -
Cca05g00515 652 Gene3D Transferase(Phosphotransferase) domain 1 142 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00515 Cca-Chr5 11682841 11688072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00515 40 326 MAP Kinase Kinase Kinase AT2G17700 25.430 2.61e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Cca05g00515 PK_Tyr_Ser-Thr 1.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00515 - - gsj:114393396 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00515 05 11682841 11688072 Cca05g00515 05 11682841 11688072 ECH
Cca03g01580 03 34545446 34550795 Cca05g00515 05 11682841 11688072 ECH
Cca05g00515 05 11682841 11688072 Cca03g01580 03 34545446 34550795 PCT