Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00504 ATGAATTTTGTTTTCTACAGTACTTATGAAGTTGCAACAACTTGTGCCTTGGCTATAGGAGCAGACAAGCTTATATGTGTTATAGATGGTCCGATACTTGATGAGAGTGGCCACCTTATTCGTTTCTTGACCCTTCAAGAGGCAAACATGCTAATTCGTAAACGGGTTGAGCAAAGTGAAACAACTGCTAACTATGTGAAAGCTGTTGATGAAGAAAGTTTCAACTCTCTTAACAATTTTAATGGGGCAGTCCATTCAACACAGAATGGAAAACCATTTTCAGAATCTCACCAAGCAACCTTTCATAATGGTGTTGGTTTTGACAATGGTAATGGCCTGTGGTCTGGGGAGCAAGGTTTTGCTATTGTAGAGATATTGCAGATTTTATTCACATTGGATGATGGGATGGTCATAGAAACAGTTGTCATACCTTGTGACTGTGAGAACAATTTCAATCCAGGATTTTTTGAGGGTAGTGATAATAACAGTGTTGTTGATGCATATGAACTTAAGGTCAGACTTGAGCATATTCTCGAGAGAATTGCGTTGATATCAGACGCAGCAAGTACTGAGAAACCTTCAGCAGTGACAAGTAGTCTGTTCATTGGTGGAGCACTGGCTGCAAGATCTATATACACATTGCAATACTTGGGAATCACAAACATTTTGTGTTTGTGTACCAATGAAATTGGACAGTCAGAAACTCAGTATCATGATCTATTTGAGTACAAGAATTTCTCTGAGAACAATTTCAATCCAGGATTTTTTGAGGGTAGTGATAATAACAGTGTTGTTGATGCATATGAACTTAAGGTCAGACTTGAGCATATTCTCGAGAGAATTGCGTTGATATCAGACGCAGCAAGTACTGAGAAACCTTCAGCAGTGACAAGTAGTCTGTTCATTGGTGGAGCACTGGCTGCAAGATCTGTATACACATTGCAATACTTGGGAATCACAAACATTTTGTGTTTGTGTACCAATGAAATTGGACAGTCAGAAACTCAGTATCATGATCTATTTGAGTACAAGAATTTCTCTGAAAGGCTTGCTAATGATAACCATCATGATTTTATTGACTCAGAATCACATAGAGCTGCTTTAAGGGGATCATCTTCCGGCAATAGAGATTGCAGTGACTCTACTCCTATGTCAAGAGAAAGTTGGCATGGAAAGTTCTATAAAGGATATGGGGAACCACTTCGTAGTCTCCGCTTGACTGCTAAGCTCCGAGACTTCCATAAATTTGCCAAGGTTGATGCGGAATCCAATAAAGAATTGGAACAGTGGAATGAAATGCTTAAAAGTGATGCTATTAAACTATGCCAGGAGAACAATTTCAATCCAGGATTTTTTGAGGGTAGTGATAATAACAGTGTTGTTGATGCATATGAACTTAAGGTCAGACTTGAGCATATTCTCGAGAGAATTGCGTTGATATCAGACGCAGCAAGTACTGAGAAACCTTCAGCAGTGACAAGTAGTCTATTCATTGGTGGAGCACTGGCTGCAAGATCTATATACACATTGCAATACTTGGGAATTgaccaggaatgttttcctaccaaagccaggagttgcttccaaaataatactcatcaataa 1605 0.3763 MNFVFYSTYEVATTCALAIGADKLICVIDGPILDESGHLIRFLTLQEANMLIRKRVEQSETTANYVKAVDEESFNSLNNFNGAVHSTQNGKPFSESHQATFHNGVGFDNGNGLWSGEQGFAIVEILQILFTLDDGMVIETVVIPCDCENNFNPGFFEGSDNNSVVDAYELKVRLEHILERIALISDAASTEKPSAVTSSLFIGGALAARSIYTLQYLGITNILCLCTNEIGQSETQYHDLFEYKNFSENNFNPGFFEGSDNNSVVDAYELKVRLEHILERIALISDAASTEKPSAVTSSLFIGGALAARSVYTLQYLGITNILCLCTNEIGQSETQYHDLFEYKNFSERLANDNHHDFIDSESHRAALRGSSSGNRDCSDSTPMSRESWHGKFYKGYGEPLRSLRLTAKLRDFHKFAKVDAESNKELEQWNEMLKSDAIKLCQENNFNPGFFEGSDNNSVVDAYELKVRLEHILERIALISDAASTEKPSAVTSSLFIGGALAARSIYTLQYLGIDQECFPTKARSCFQNNTHQ 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00504 534 Gene3D - 2 72 IPR036393 -
Cca05g00504 534 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 147 247 IPR035010 GO:0004721|GO:0009737|GO:0043622
Cca05g00504 534 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 248 347 IPR035010 GO:0004721|GO:0009737|GO:0043622
Cca05g00504 534 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 248 347 - -
Cca05g00504 534 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 348 517 IPR035010 GO:0004721|GO:0009737|GO:0043622
Cca05g00504 534 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 348 517 - -
Cca05g00504 534 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 147 247 - -
Cca05g00504 534 Gene3D Protein tyrosine phosphatase superfamily 274 367 IPR029021 -
Cca05g00504 534 Gene3D Protein tyrosine phosphatase superfamily 175 258 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00504 Cca-Chr5 11340250 11349299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00504 333 515 Protein tyrosine phosphatase (PTP) family AT5G23720 63.587 1.83e-65 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00504 K14165 - gmx:100791993 318.546