Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00500 ATGGGGAAGCCGACGGGGAAAAAGAAAGATCAGGAGGCAGGTCCTGCGAGGGCGAACGGGCACCACGGGCACTCCAAGTCATGGGAGGAGAAGCGGGGGTCGTCGAAGGCTCTGGACGAGGACACGGCGATGTTCATAAACATGTCGCAGGAGCTTCGGGAGGAAGGGAACAGGCTGTTCCAGAGGAAGGACCACGAGGGGGCGATGCTCAAGTACGAGAAGGCCCTCAAGCTGTTGCCCAAGAACCACATCGACGTGGCGCACCTGCGCACCAACATGGCCGTCTGCTACATGCACCTCGGCCTCGGCGAGTACCCACGCGCCATCAGCGAGTGCACCATGGCGCTCCAGGTCTCGCCCAGGTACAGCAAGGCCCTTCTGAAGCGCGCCAAGTGCTACGAGGCCTTGAACCGCGTCGATTTGGCCATGCGCGATGTGCGCGTCGTCCTCAATTGGGAGCCTAACAACTCCACCGCCTTGGAGGTTTTGGATAGCTTGAGGAAGACCATAGATGAGAAGGGGATCGTCGTCGACGAGACCGAGATCGCCCTCGCCGCGCTGCAGCAGCAGCCGGAGGCCGGCGCCTCTTCCCGCCTCCGGAAGGTGGTGAGGGAGAAGATTAAGAAAAAGAAGGATTTCAAGGGTGAGGATGAAGGGTCATCAAAGAATGTCATAATTGaggagaaggagaatgttaaaatgaaggagaaagaaaaagagaaggagGAAAAAGGGGTGGTTACTAGGACTGTGAAGTTGGTATATGGAGAGGATATAAGGTGGGCGCAATTGCCTGTGAATTGTGGGATGAGGTTTGTGAGGGATGTGATAAAGGATAGGTTTCCTGGGTTGAAGGGTGTTCTTGTCAAGTATAGAGATAGGGAGGGGGATTTGGTTACTATAACTAGTACTGCTGAATTGAGGTTGGCGGAGACTTGTCATGTGCTTGGGTCGATTAAGCTTTTTGTTTCGCAGGTTGAGCCGGAACATGAGCTGTGTTATGACGATGATGAGGTGGGGGTGGGGGTGGGGGAGGGTCTGAAGTTGAAGCGGGTTGAGAATGAAGGCAGGATGAGTACTACTGTGGAGGATTGGCTTGTGCAGTTCGCGAGGCTGTTTAAGAATCATGTTGGGTTTGATTCGGATGTGTATTTGGACATTCATGAGGTTGGGATGAAGCTGTATTCGGAGGCCATGGAGGAAGCGGTGACCAGTGAGGCTGCTCAGGAGCTGTTTGAGATTGCGGCGGATAGGTTTCAGGAGATGGCGGCTTTGGCGTTGTTCAATTGGGGGAGTGTGCATATGTCAAGGGCGAGGAAGCGGGTGAATTTGATGGAGGATGGGCCAAAGGAGTCTTTGTTTGAGTGTGTTAAGGCTGCGTATGAGTGGGCTCAGAAGGAGTACAAGAATGCAGAGAAGAGATTTGAAGAGGCTGTGAAGATCAAACCGGATTTTTATGAGGGGCGTCTTGCACTTGGGCATCAGCAGTTTGAGCAAGCGAGGCTCAGCTGGTGTTATTTGATTGCAAACGAGAAGGATTTGGAAGCTGGACCTTCGGATGAGGTTCTGCAGCTCTATAACAAGGCGGAGGACAACATGGAGAAAGGCATGTTGATGTGGGAGGAGATTGAGGAGCGGCGTTTGAATGGATTGTCCAAATCAGACAAGTATAAAGAGCAGTTAGAGAAAATGGGTTTGCATGGTCTTTTCAGGGATGTTTCTGCTGATGAAGCTGAAGAGCAGGCTTCGAGGATGAGGTTGCAGGTATATCTTTTGTGGGGAACCTTGCTCTATGAGCGCTCTGTTGTGGAGTATAAGCTAGGCCTGCCAACATGGGAGGAATGTTTGGAGGTTGCTGTTGAAAAATTTGAACTGGCTGGAGCTTCTTCCACTGACATTGGGGTCATGATAAAGAACCACTGTTCTAATGAAACAGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAGTTTGATGTCCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCAAAACTCCATTACATCCTGGAGCAATTTTGA 2082 0.5043 MGKPTGKKKDQEAGPARANGHHGHSKSWEEKRGSSKALDEDTAMFINMSQELREEGNRLFQRKDHEGAMLKYEKALKLLPKNHIDVAHLRTNMAVCYMHLGLGEYPRAISECTMALQVSPRYSKALLKRAKCYEALNRVDLAMRDVRVVLNWEPNNSTALEVLDSLRKTIDEKGIVVDETEIALAALQQQPEAGASSRLRKVVREKIKKKKDFKGEDEGSSKNVIIEEKENVKMKEKEKEKEEKGVVTRTVKLVYGEDIRWAQLPVNCGMRFVRDVIKDRFPGLKGVLVKYRDREGDLVTITSTAELRLAETCHVLGSIKLFVSQVEPEHELCYDDDEVGVGVGEGLKLKRVENEGRMSTTVEDWLVQFARLFKNHVGFDSDVYLDIHEVGMKLYSEAMEEAVTSEAAQELFEIAADRFQEMAALALFNWGSVHMSRARKRVNLMEDGPKESLFECVKAAYEWAQKEYKNAEKRFEEAVKIKPDFYEGRLALGHQQFEQARLSWCYLIANEKDLEAGPSDEVLQLYNKAEDNMEKGMLMWEEIEERRLNGLSKSDKYKEQLEKMGLHGLFRDVSADEAEEQASRMRLQVYLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGASSTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQF 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00500 693 PANTHER PROTEIN PHOX4 1 692 - -
Cca05g00500 693 Coils Coil 454 481 - -
Cca05g00500 693 Gene3D Tetratricopeptide repeat domain 46 173 IPR011990 GO:0005515
Cca05g00500 693 Pfam PB1 domain 248 325 IPR000270 GO:0005515
Cca05g00500 693 CDD PB1 250 324 - -
Cca05g00500 693 PANTHER PROTEIN CLMP1 1 692 IPR044517 -
Cca05g00500 693 SMART tpr_5 49 82 IPR019734 GO:0005515
Cca05g00500 693 SMART tpr_5 87 122 IPR019734 GO:0005515
Cca05g00500 693 SMART tpr_5 123 156 IPR019734 GO:0005515
Cca05g00500 693 SMART tpr_5 452 485 IPR019734 GO:0005515
Cca05g00500 693 MobiDBLite consensus disorder prediction 1 36 - -
Cca05g00500 693 SMART PB1_new 248 326 IPR000270 GO:0005515
Cca05g00500 693 ProSiteProfiles PB1 domain profile. 248 326 IPR000270 GO:0005515
Cca05g00500 693 SUPERFAMILY TPR-like 49 499 IPR011990 GO:0005515
Cca05g00500 693 Coils Coil 225 245 - -
Cca05g00500 693 SUPERFAMILY CAD & PB1 domains 248 329 - -
Cca05g00500 693 ProSiteProfiles TPR repeat profile. 49 82 IPR019734 GO:0005515
Cca05g00500 693 Gene3D - 231 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00500 Cca-Chr5 11078039 11082643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00500 39 156 Calmodulin-binding Proteins AT3G25230 30.709 1.66e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00500 - - vra:106765155 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00500 05 11078039 11082643 Cca03g01596 03 34770236 34775097 PCT