Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00496 ATGTTAATTCAGGGAAGAAGAAGAAGGGCCATTAACCAAGAATCACCTAGCATCTTAGAAACACCAATTCGAGCTTTGAATGCTCAAGGTGAAGAGATGCAGGGGACAATTGTAGATGCTACTTATATATTCGATTCTATGGACTTTGGTCACAACGACAACATAGTTAACAATGGTGGAATTTCAAGATCAATTGAGGATAATACTTATATCTTTGATTCAATGTTGGATCACAACAACAACAATGGTGAAGTTTTAGGAATGATTCCTGGAAATCAAGACTCTATTAAAAATCTTGAAGTCATCAGAATTCAAGAAAAAACAGGTCAATCTAGAGATTCACCATCGTGTTCCATATGTCTAGGGGTACTTTCAAATCGATCAAAAGCCATTCGCATGCCCCACCCTTGTTTTCATATCTTTCATCAACATTGCATTATAAAGTGGCTCAAAATTAGTAACACATGTCCTTTGTGTCGTAGGACTATCTAG 492 0.3659 MLIQGRRRRAINQESPSILETPIRALNAQGEEMQGTIVDATYIFDSMDFGHNDNIVNNGGISRSIEDNTYIFDSMLDHNNNNGEVLGMIPGNQDSIKNLEVIRIQEKTGQSRDSPSCSICLGVLSNRSKAIRMPHPCFHIFHQHCIIKWLKISNTCPLCRRTI 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00496 163 ProSiteProfiles Zinc finger RING-type profile. 117 160 IPR001841 -
Cca05g00496 163 Pfam Ring finger domain 116 160 IPR001841 -
Cca05g00496 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 163 IPR013083 -
Cca05g00496 163 SMART ringv_2 116 160 IPR011016 GO:0008270
Cca05g00496 163 SUPERFAMILY RING/U-box 102 163 - -
Cca05g00496 163 PANTHER SI:CH211-59O9.10 38 163 - -
Cca05g00496 163 PANTHER SI:CH211-59O9.10 38 163 - -
Cca05g00496 163 SMART ring_2 117 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00496 Cca-Chr5 11037356 11037847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00496 72 160 C3H Transcription Factor Family AT5G01980 32.222 2.42e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00496 - K22378 pvu:PHAVU_007G098000g 94.7449