Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00494 ATGGAGAGCGCGTGCCGGAGGAAATGTGATTCGCCGTTTCACCCGTCGACGTCTGCCACGGTTTCGTCTGCGCCGCCGCGGAAGGAGATGAATGCAAGCTATTGTCTTTATCCACAAGTTGCTCATGGTTTAAGATCAAAATTTGTTGAAGGGAAGCAGGGCCCTGTATACCCAAGCTTTCCTCACTCAACCACCCATGGATCAGGCGAAGATGATAGTGGAAATTCATTTCTGGCTCTCCTTTATAGTCCTCCATCCTTGTTACAATATGACTTCCAGGATTTGTCTGATCGCAAACTTTGCATCTCATCTGGTGATTGTACTGCTGCTATTGGGAATTCTGTTGTTCCTTCTATAGAAAGGGGAACCTTCCGAACGTCTGGTCTGGGGTTGATAACAGAAAATTTAATTAACCATAACCTGCAAAGTTGTGTGAACACTTATTCTGGGCTTTCGTCCAGGGGAATGGTTGGTCTGAATAATAGTAGTAATTTTGTCTTCCATGATATTCAGAGTAGCAATACTGCTACTCAGCCCACAGTTCCTGGTGATGAGAAATCAAGGGAGTCTTTTTCTTCTCCAGGTCAATGCCTAGGTACAACCCCTGCATCTAGTCTAAATGTTTGCTGCTCAGATATGCAAACTACACCAAACATGGCTTTAGAACTTTCATCTAAGTCGACTTCCTTTATGAGTGGTTGTCCTCGTGTGTTCTGCATGGGGAAAAGTGGCCATCTTCTTCTTAGCAATACAGGGCTTCTTGGTATTGTTTGCTCATGCCATTGTTGTCACATGTCTGTTCGTAAGTTTTGTGAGCATTCAGGATTACATGGAGTTGACCCAGGGGATGCTGTCTATGTGGAAAGTGGGGAGACCATTTCTCAATGGAAGAAGCTATACTTCTTGAGATTTGGGATTAGGTCTCTGGGAAATGAGAATGAGTGGGACTGGCCAGAAGTATTATCAACAACAGGCAGTCTGATGAAATCCAATGCATCTGCGTTTGATATGTCCAAGACTAATTTGTCTCATATGTTGAGTTCATCTGCAGTCATGTTAAGAAAACAAGCGACAACAATCCAGGATGATTGCAACATTCCACTCAAAGGTTTCACTGGTATTTCACAAAACAGCTTGTATGATCAGTTGAAAAACCAGTTAATGGAATCTAATTTGGCTATGTGTACAACTGCACCAAACTTTGTTGGAACTCAACTGGATAATGATTGTCAGCCTATACCTACTTTCTTTGATTCTCTAAAAAGGAAAGGAATTTGGTCAACTGCCTACTCTTCATTGGAAACTCCAACAAGCCTTTTGAAAGACCATGATTGCATCAAAAAGCAGAGTGCAAAGGATGGTCTTGTAGGCAGAGATGCAGCTTCCTCCAATGCTCATCTTAGGCTTGGTCAACCACCTCAGACGGGAAATCCACTTCCATCATTTATAGAACCACTGCTGTTTAATGCTGTTGCCAGTCCTCCAAAATTGCAACCTTTGAAGCAGATAATTAATAATGCAGACCTCAGCAGGGTGGAGGAATTACAGAATAATTTTAGCTATGTTGCTGATTCGTTCAAAATGGTTGAAGAAATGCCTCAGCTTAAACTCAGGAACTCTATGTCTGCTGTTAGTAATGCTCCAGGTGCTGTTAGAGCTAGATCAGAAACTAATAGTGTGGCCAAGGGTTTATCATTTTCATCATTCTCACAATTTGATAATCAACCCAGGGGAAAGACAAAAGCTAGTGAAAATTTGGGAAGGCAATCGAATAATTGTGGTTTAGGGACCAATAGATATTTACACAATGATAAATGGGCAAGCTTTCCGAAAGACTCTTGTGCCAAAATGAATTCTGGATTTGGAATTGGTCAGTTAATGGACTATCCAAGCTCCATCACAAGAGCTGTAGGTGGCAGTGATAACTGTATTTCAGTTGTTAATACAAAGATAATTGAATCAAGCTTGCCATCATATTTATCTACTGGTGCAAATATTTTGCATCATTCAAACAATGTATCTGCTTTTGGTCGAGAAAAACATGTGACTCCACAGACATCCATTCCATTTGAAGGGATTTTGAAAGGCCTTCCCGAGCATGTTTCAAGTTCTGTGTCAAATCAGACTCCTACTTTGCCACAGCAGCAGGGCATTAATATGGATGCTCATTTGCTTGATGAAAACACGAGGTTGCTTACATTGGCACAGGTACTAGAGTTATCTAAGCAACAACATGCATTGTATTTTAATAATATGAATCAAAAGCAAGGGAGACCAAGCAGTATTTCAAATGTTCAGCATTATATGTATGAGACTTCAACATCTGAACAGGACACTTCTGGCGCAACATTGAAATTGACCCAAAATAGAGGGATTTGTGGGAATCTTGAGAGTAGTGTTGGTTTAGAGAAACTGGCTTCCCTCACAGGTATGAACATGTATTGTGATTTGTCTGGCCTGGCACCAATACCTTTACATTCTAAAGAAAAGGAATCGCAATGTAAACATTCCTATGATCTTCAAAATAAAGAGCCTTCTTTAAGCCTTGGAATAAACAAAGATAATAACAGATCAAGTGCATGTGAAAAATGCTCCGAGCATCCATCCAATGTATGTTTGGGAGGCAAGCACCCTGGTGCAGCTCGGGTAAACTGTTGCAGAAGCAATTTTTTCTCCAGAATTGAACCCGTTTGTTATAACTTAAAGCAACAACTTGCAAATGCCAGTGGTGAAACTTCGTTGAAGATGGCTTCAGATTTAAGTAGAGATCCGTTGAAGGACAAAAATATCCACTTCCACCTTGAGCAAGGTGGGAAGTTAGATGGCCGAGACTCAATCAAAATTGGCTTTCATACACCTCAATGGAGAGATGTGCCGGGTAAGATCAGAAAAGCAGTTTGTGATGCAACATCTTTAGATCAGACAGCTACTGGTTTGGATTGGGAAGGACAAGATGGTGTTCAACTTGAAAATATTTCTATGAAACGCTTCAAAAGAACTATTGATATTGGAGATATGTCAAAAAAGAAAGAAAGTTCTAATGTTTCTTCTGGATGCTCTGTTCCTGTGGTTACTCGGGCATCTGTGGAGGTTAACAAAGTTGATTCCTGTACTGATGATGCTGTAGGCACTGGCTTTTTCAACAACCTTGTAGTTGATGAAGGGTCAGGAATTGTTCAAGACTTGTCGTCAGATTTGGTTGAAAGTGAAAGAAGTGATCAGTTTGTTGTCTCAACTTGTGGGAGTTACTTGAAAAATGAATATCCAAGAGTCTTAAACGATCAACCATGTTGCAATCTCCTTGATGATCTTAAACTGTTAGATTCCTTGATATGGAGGAAAGGACGGAATCAAAATCATTATCTGTTTTCTGCTAAATGTAAAAGTAATCAATCCCAAAATGTCAAGAAGGGCTTCAAAGGAAAAAAGAGGAAGAGAATTGAGGTGAGGATTCCAAATGCTTCATTATCTTCTGGATCCCCTTCCTTATTGCATAAAAGGAACGGTGAAGGTGCTGGGATTTCTAATTCCTCTTCTAGTTTGTCAAAAGAAATGCAAACGCATTCTTTGTGTAGCCCACAAAAATCATCTGACAAGTCTTCTTTTGTTCAACCTTGTAACAAACAAAGGCATTATGCATTTTCATCCAAATTTTTTTCTCGCAAGAATCATCTGAACCAGCATCACAGTTACAAAGTTGGCTCTGAGTCAGAATCAAATTCTAATGCTGAGTTTCACACGTTGCCTGGAGTTTCTGGAACAAAGAAATTAAAAAAGGATCCTACTTCTGATTGTTTTGAGCAGTTTCAAATGCAAGAAACAGTCTATGAGGAACCTGAAAATGTGAGGCTATTCTCTTGCAGGAAGAGAAATGCTCATAGAATCACAAGGCCTGTAGTATGTGGAAAATATGGTGAAATATCTAATGGGCAATTGGCTGGAGGATTGCAAAAACCAGCAAAAATTGTCTCTCTCAGCAAGGTTCTTAAATATTCCAAAAGATGTATGGGCCATGCAAATGGAAAACCTAAACTGACCTCAAAGAAGAAATGGAAGAGATTGAGCATGGGAACTAGTAGTGGGAACCCTGGTTTAGAAATTAAGGAAGGCATTAAAACCCGAAATACAATAATTTGTAATGAAACAAATGTTGATGTGTCTATGGAAGATTTGGAGAGGGGTGGCAAGCCACCTGTTGTTTACGTAGGGAAGAAAGATGACAAGGCTAAGCAGGTTGATAGTGTTGGAAATAGTGCTAATGTTCCATTGAGGGTGAAGAGCAAGGAAGTTCGGAAACAGCGTAGCATTAATGAACTCATTGCTAAAGAAACCAAAGTGATGGATATGATGAATTGTGTTCAAGACAGGGAGCCTGATTTGTGTAGCACAAGTAGAAACTCTATTCAAGGTCACACAAGCATATTCACCATAAATTCAGATGCTTTCTGTTGTGTGTGTCGAAGCTCAAGCAATGATAAATTCAACTGTTTGTTGGAGTGTAGTCAATGTCTACTTAGAGTGCATCAGGCTTGTTATGGTGTTTCCACATTGCCCAAAAAAACTCGTTGGTGTTGCAGGCCATGTCGAACAAACTCAAAAAATATTGCTTGTGTCCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCAATAATGAGTCACACAATTGTAAAAAGCCTCCTGAAAGTGTGGAATGGTGGGGAAGATGGTATGCCTAAGCATACAACTTCGGATGATGTTTTCAAAAAGGAAATATCTGCATTTCCATCCTCAAAAGCTAGATTAGAAGTTGATCAAGAAAGTGTTTTGAAGCTCAAAATTGTTGATACATCAGCAACTGATCTGGGGAAAGTTCAAATATCAACAAATTGCATACAACACACTCTGACCTCTATTTCTAATTTCAAGGTACATAACAGCATTACAGCAGGAGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGGCTTTGGACTCCTGGAACAAGATGCCCTAATGTTGACACCATGAGTGCTTTCGATGTATCTGGTGTTTCACGACCAAGAGCAGATGTGGTTTGTTCCATTTGCAATCGACCAGGCGGTTCTTGTATAAAGTGCAGGATTGTTGATTGCTCTGTGAAGTTTCATCCTTGGTGTGCTCACCAGGAGAACCTATTGCAAAGTGAGACTGAAGGCATTGATGACGACAAGATTGGATTTTATGGAAGATGCATGCTTCATACAATTGAACCTAGAAGTCTGTCTATATATGATTATATTGATGAAATGGGCAGTCAAGAAGAAAAGGAATTCACCTGTGCCAGGGCAGAGGGTTACAAGGGCCGTAGATGGGATGGTTTTCACAATAATCACTTGCAAGGTGGATGCCTTGTTCCTGAGGAGCAGCTAAATGCTTGGGTTCACATTAATGGGCAGAAATTATGTTCTCAGGGACTGCCAAAATTCCCAGATTTAGATATTGAGCATGATTGTCGAAAGGAATATGCTCGGTACAAACAAGCAAAGGGATGGAAACACCTTGTTGTATATAAGTCCCGAATTCACGCTCTTGGTCTTTACACTTCACGATTCATTTCCCGGGGTGAAATGGTTGTTGAGTATATTGGTGAAATTGTGGGGCTGCGTGTGTCTGATAAAAGAGAAAAAGAATATCAATCTGGAAAGAAACTTCAGTACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACGAGGAAAGGGGGGATTGCTCGATTTGTTAACCACTCCTGCCTGCCAAATTGCGTGGCAAAAGTGATTACTATAAGGCATGAGAAGAAGGTTGTCTTCTTTGCAGAGAGGGACATATTTCCTGGTGAAGAGATTACGTATGATTACCACTTTAACCACGAAGACGAAGGAAAAATTCCTTGTTACTGCAATTCGAAAAATTGCAGGCGCTATATGAATTGA 5961 0.4036 MESACRRKCDSPFHPSTSATVSSAPPRKEMNASYCLYPQVAHGLRSKFVEGKQGPVYPSFPHSTTHGSGEDDSGNSFLALLYSPPSLLQYDFQDLSDRKLCISSGDCTAAIGNSVVPSIERGTFRTSGLGLITENLINHNLQSCVNTYSGLSSRGMVGLNNSSNFVFHDIQSSNTATQPTVPGDEKSRESFSSPGQCLGTTPASSLNVCCSDMQTTPNMALELSSKSTSFMSGCPRVFCMGKSGHLLLSNTGLLGIVCSCHCCHMSVRKFCEHSGLHGVDPGDAVYVESGETISQWKKLYFLRFGIRSLGNENEWDWPEVLSTTGSLMKSNASAFDMSKTNLSHMLSSSAVMLRKQATTIQDDCNIPLKGFTGISQNSLYDQLKNQLMESNLAMCTTAPNFVGTQLDNDCQPIPTFFDSLKRKGIWSTAYSSLETPTSLLKDHDCIKKQSAKDGLVGRDAASSNAHLRLGQPPQTGNPLPSFIEPLLFNAVASPPKLQPLKQIINNADLSRVEELQNNFSYVADSFKMVEEMPQLKLRNSMSAVSNAPGAVRARSETNSVAKGLSFSSFSQFDNQPRGKTKASENLGRQSNNCGLGTNRYLHNDKWASFPKDSCAKMNSGFGIGQLMDYPSSITRAVGGSDNCISVVNTKIIESSLPSYLSTGANILHHSNNVSAFGREKHVTPQTSIPFEGILKGLPEHVSSSVSNQTPTLPQQQGINMDAHLLDENTRLLTLAQVLELSKQQHALYFNNMNQKQGRPSSISNVQHYMYETSTSEQDTSGATLKLTQNRGICGNLESSVGLEKLASLTGMNMYCDLSGLAPIPLHSKEKESQCKHSYDLQNKEPSLSLGINKDNNRSSACEKCSEHPSNVCLGGKHPGAARVNCCRSNFFSRIEPVCYNLKQQLANASGETSLKMASDLSRDPLKDKNIHFHLEQGGKLDGRDSIKIGFHTPQWRDVPGKIRKAVCDATSLDQTATGLDWEGQDGVQLENISMKRFKRTIDIGDMSKKKESSNVSSGCSVPVVTRASVEVNKVDSCTDDAVGTGFFNNLVVDEGSGIVQDLSSDLVESERSDQFVVSTCGSYLKNEYPRVLNDQPCCNLLDDLKLLDSLIWRKGRNQNHYLFSAKCKSNQSQNVKKGFKGKKRKRIEVRIPNASLSSGSPSLLHKRNGEGAGISNSSSSLSKEMQTHSLCSPQKSSDKSSFVQPCNKQRHYAFSSKFFSRKNHLNQHHSYKVGSESESNSNAEFHTLPGVSGTKKLKKDPTSDCFEQFQMQETVYEEPENVRLFSCRKRNAHRITRPVVCGKYGEISNGQLAGGLQKPAKIVSLSKVLKYSKRCMGHANGKPKLTSKKKWKRLSMGTSSGNPGLEIKEGIKTRNTIICNETNVDVSMEDLERGGKPPVVYVGKKDDKAKQVDSVGNSANVPLRVKSKEVRKQRSINELIAKETKVMDMMNCVQDREPDLCSTSRNSIQGHTSIFTINSDAFCCVCRSSSNDKFNCLLECSQCLLRVHQACYGVSTLPKKTRWCCRPCRTNSKNIACVLCGYGGGAMTRAIMSHTIVKSLLKVWNGGEDGMPKHTTSDDVFKKEISAFPSSKARLEVDQESVLKLKIVDTSATDLGKVQISTNCIQHTLTSISNFKVHNSITAGVLDPTVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRADVVCSICNRPGGSCIKCRIVDCSVKFHPWCAHQENLLQSETEGIDDDKIGFYGRCMLHTIEPRSLSIYDYIDEMGSQEEKEFTCARAEGYKGRRWDGFHNNHLQGGCLVPEEQLNAWVHINGQKLCSQGLPKFPDLDIEHDCRKEYARYKQAKGWKHLVVYKSRIHALGLYTSRFISRGEMVVEYIGEIVGLRVSDKREKEYQSGKKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCLPNCVAKVITIRHEKKVVFFAERDIFPGEEITYDYHFNHEDEGKIPCYCNSKNCRRYMN 1986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00494 1986 SUPERFAMILY FYVE/PHD zinc finger 1477 1534 IPR011011 -
Cca05g00494 1986 Pfam Tify domain binding domain 253 299 IPR032308 -
Cca05g00494 1986 MobiDBLite consensus disorder prediction 1339 1367 - -
Cca05g00494 1986 CDD ePHD 1652 1744 - -
Cca05g00494 1986 Pfam SET domain 1855 1962 IPR001214 GO:0005515
Cca05g00494 1986 CDD SET_SETD1-like 1844 1982 - -
Cca05g00494 1986 ProSiteProfiles Zinc finger PHD-type profile. 1480 1531 IPR019787 -
Cca05g00494 1986 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE TRITHORAX 27 1986 - -
Cca05g00494 1986 SMART PHD_3 1689 1745 IPR001965 -
Cca05g00494 1986 SMART PHD_3 1482 1529 IPR001965 -
Cca05g00494 1986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1471 1536 IPR013083 -
Cca05g00494 1986 Pfam PHD-zinc-finger like domain 1650 1724 - -
Cca05g00494 1986 Pfam PHD-finger 1495 1529 - -
Cca05g00494 1986 MobiDBLite consensus disorder prediction 1171 1202 - -
Cca05g00494 1986 ProSiteProfiles Extended PHD (ePHD) domain profile. 1631 1745 IPR034732 -
Cca05g00494 1986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1631 1745 IPR013083 -
Cca05g00494 1986 MobiDBLite consensus disorder prediction 1 25 - -
Cca05g00494 1986 Gene3D SET domain 1754 1986 IPR046341 -
Cca05g00494 1986 MobiDBLite consensus disorder prediction 1230 1261 - -
Cca05g00494 1986 MobiDBLite consensus disorder prediction 571 594 - -
Cca05g00494 1986 SMART PostSET_3 1970 1986 IPR003616 -
Cca05g00494 1986 SMART set_7 1842 1969 IPR001214 GO:0005515
Cca05g00494 1986 ProSiteProfiles SET domain profile. 1842 1963 IPR001214 GO:0005515
Cca05g00494 1986 SUPERFAMILY SET domain 1808 1982 IPR046341 -
Cca05g00494 1986 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 27 1986 - -
Cca05g00494 1986 ProSiteProfiles Post-SET domain profile. 1970 1986 IPR003616 -
Cca05g00494 1986 MobiDBLite consensus disorder prediction 174 193 - -
Cca05g00494 1986 MobiDBLite consensus disorder prediction 1230 1248 - -
Cca05g00494 1986 MobiDBLite consensus disorder prediction 1150 1202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00494 Cca-Chr5 10996970 11015478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00494 1844 1982 C2H2 Transcription Factor Family AT2G23740 33.333 1.31e-16 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca05g00494 SET 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00494 - - ccaj:109815338 3993.74