Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00487 ATGAATACGAAGCTTCTTCTTATGCTTCTCATGCTCCTCCTTATTCTCCCCAAACCCTTTTGGATTCTTGCATCATCATACCCTCTTGCTCCCTCACCTCAATTTCCACCCTTTTCCACTTCAATGTCTGCTTCCTCTCCAGGAATTGTGATGGGGGGTGAACAGCAACAAATGGATTCACACAAGAAAATGGTAACTGCCATTGCCGTAACCAGCACTTCACTTGGTGCAGTCATTTTGTGTGTGTTGTGTGTCTGGATTTACTACTGCAAGTACCCTTCAAAACCCAACACCAAAAAGGGTCAAAGATCAGATGCTGAGAAAGGGCTAGGTTCAGCACCACTTTTGAGTAAATTCAGCTCTATAAAGCTGGTTGGTAAGAAAGGATTTTGTCCAGTAATTGATTATAAGCAAATAGAAAAAGCCACGGGCAATTTCAAGGAAATTAACATCTTGGGTGAGGGTGGTTTTGGATGTGTTTACAAGGCTCATTTGGATGATAATTTGGATGTTGCCGTTAAGAAATTGCACTGTGAAAATCAACATGCAGAGCAAGAATATGAGAACGAGGTGGATTTGTTAAGTAAAATTCAACATCCAAATGTAATTTCTCTACTGGGTTGTAGCAGTAATGATGATACGAGAATTATTGTCTATGAATTGATGCATAATGGATCATTGGAAACTCAATTACATGGACCTTCTCATGGCTTAGCATTGACTTGGCATTTGAGGATGAAGATTGCTCTTGACACAGCAAGGGGATTAAAATATCTGCATGAGCACTGTTATCCTGCGGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATACAAAGTTCAATGCCAAGCTTTCTGATTTTGGTCTTGCCATAACAAATGGGTCCCAAGATAAGAATAACATCAAGCTTTCAGGCACGTTGGGGTACGTAGCCCCGGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTGTATGCTTTTGGAGTCGTGCTTCTGGAGCTTCTATTGGGAAAGAAGCCTGTGGAAAAACTAGCACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGATCTAAGCTTCCAAACATTGTGGATCCTGTAATTAAGAATACAATGGACCTCAAGCACTTATACCAGGTTGCTGCTGTGGCCGTTCTATGCGTGCAACCAGAGCCAAGTTACCGTCCATTGATTGCAGATGTTCTCCACTCACTCATCCCTCTTGTGCCTGTAGAGCTTGGAGGAACACTCAGAGTTCCACAACAGTCACAGCAAGTCTTACCCGTTGACTCACCTGTGGATCCTAGTCAACAATCAGTTTGA 1356 0.4196 MNTKLLLMLLMLLLILPKPFWILASSYPLAPSPQFPPFSTSMSASSPGIVMGGEQQQMDSHKKMVTAIAVTSTSLGAVILCVLCVWIYYCKYPSKPNTKKGQRSDAEKGLGSAPLLSKFSSIKLVGKKGFCPVIDYKQIEKATGNFKEINILGEGGFGCVYKAHLDDNLDVAVKKLHCENQHAEQEYENEVDLLSKIQHPNVISLLGCSSNDDTRIIVYELMHNGSLETQLHGPSHGLALTWHLRMKIALDTARGLKYLHEHCYPAVIHRDLKSSNILLDTKFNAKLSDFGLAITNGSQDKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGKKPVEKLAPAQCQSIVTWAMPQLTDRSKLPNIVDPVIKNTMDLKHLYQVAAVAVLCVQPEPSYRPLIADVLHSLIPLVPVELGGTLRVPQQSQQVLPVDSPVDPSQQSV 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00487 451 PANTHER BNAA04G14780D PROTEIN 39 437 - -
Cca05g00487 451 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524
Cca05g00487 451 CDD STKc_IRAK 152 419 - -
Cca05g00487 451 Gene3D Transferase(Phosphotransferase) domain 1 222 421 - -
Cca05g00487 451 ProSiteProfiles Protein kinase domain profile. 146 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00487 451 SMART serkin_6 146 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00487 451 Gene3D Phosphorylase Kinase; domain 1 115 221 - -
Cca05g00487 451 Coils Coil 173 193 - -
Cca05g00487 451 SUPERFAMILY Protein kinase-like (PK-like) 127 416 IPR011009 -
Cca05g00487 451 PANTHER OS01G0750732 PROTEIN 39 437 - -
Cca05g00487 451 Pfam Protein kinase domain 146 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00487 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00487 Cca-Chr5 10796618 10803814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00487 27 362 Receptor kinase-like Gene Family AT1G80640 47.965 3.78e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Cca05g00487 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00487 - - gmx:100785380 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00487 05 10796618 10803814 Cca03g01611 03 34986559 34990703 PCT