Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00485 ATGGCCAGACCACAACAGCGTTACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTGAAGACAAGGATATGGCTTGGTACTTTTGAAACAGCTGAGGATGCAGCTAGAGCCTATGATGAAGCAGCTAGGCTAATGTGTGGTGGCAGAGCAAGGACAAACTTCCCTTTCAACCCCAATGTGTCTCACTCATCATCATCTTCTAGTTCAAAGCTTCTCTCAGCAACTCTTACTGCCAAATTGCACAGGTGCTACATGGCTTCTTTGCAAATGACTAGGCAGGCTTTGGCATCATCATCAGAGCCTCAGAGAACAGCTTCAGTGCCGAATGCCACCTCTACATCCACACCAAACAATAACTTCAGTGTAAAGAGTGGCCAAACTCATGCACACAAGAGACCAGAGGAGGAGGATCAAGAGTCAGAGGCCAACAGGGTCAAAGAAGTGGAAAATCATGTTCCTCTACAGTTCAAGCCTCTTGAGGAAGATCACATAGAGCAAATGATTGAGGAGCTTCTTGATTATGGCTCTATTGAGCTATGCCCTCTAATTGATGCATAG 585 0.4701 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGGRARTNFPFNPNVSHSSSSSSSKLLSATLTAKLHRCYMASLQMTRQALASSSEPQRTASVPNATSTSTPNNNFSVKSGQTHAHKRPEEEDQESEANRVKEVENHVPLQFKPLEEDHIEQMIEELLDYGSIELCPLIDA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00485 194 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Cca05g00485 194 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cca05g00485 194 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Cca05g00485 194 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cca05g00485 194 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cca05g00485 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 190 - -
Cca05g00485 194 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 190 - -
Cca05g00485 194 MobiDBLite consensus disorder prediction 136 166 - -
Cca05g00485 194 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Cca05g00485 194 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cca05g00485 194 MobiDBLite consensus disorder prediction 103 166 - -
Cca05g00485 194 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cca05g00485 194 MobiDBLite consensus disorder prediction 103 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00485 Cca-Chr5 10725578 10741274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00485 1 192 AP2-EREBP Transcription Factor Family AT5G25190 62.887 5.29e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca05g00485 AP2 6.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00485 - - ccaj:109815350 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00485 05 10725578 10741274 Cca03g01613 03 35004991 35006340 PCT