Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00480 ATGGAAGGACTAAGCAAGAAGGAGGCAGAGTTTTGTGACAGAGGAAGCATCTTTTCCTCTGCTCCAGAGGCTCCCCCAAGTCCAAGTACCCCACTGCAGCATCCAAGGGAAAAGAAGCAGCTACTATCTGTTGATGAAGAAGAGGAAGAAAAGGATCCAAAGCATGTTGTTGTCACTACTTTATTGGATCTCAATGTCTCAGGTGATGATTCCTTCACCCCAGAAGAAGGGGCAGAACTGAACCTCCTCACATGTTTGGATGTGACTGCAAATTCATCAGAAACACCAACCCCTCTTGATGCTGAGCCAAGAGTCTTCTCTTGCAACTACTGCCACAGAAAGTTCTACAGTTCACAAGCACTAGGTGGCCACCAAAATGCACACAAGAGAGAGAGGTCAATAGCAAAGAGAGGTCACAGATTTGGAACACAGCAGATTATGGCCTTTGGACTTCCCTTATTGCATAGAAACAACCACTATGCAGCAGCACCAAGCATGGCTTCTCTACCCCTTTATGGTGCTTGCAGCAATAGAGGCCTCGGAATTCAAGCACACTCCATGATCCACAAGCCTTCTCATGGATTTGGAGGCTCTTATGGACACCATCATGGTTGGTCTAGACCCATCATTGATCAACAACCAGGAGTAGCTAAGCTTGCTGTGCCTGATTTTCTCAGAACAAAATCAGCATTATCATCATCACAAAGCAGTGTTGGTAGGTTTGAAATGGTTAATAGTACTAATACCATGATGAATTCTGTGGCCAACAAGGAAATCACTGGTTGTGTGGCTACTGGTGGAACTCTTTTGAAGAGTAGTGCTAATCAAGAAGAAATGAAGCACCTTGATCTGTCCCTCAAGCTCTGA 867 0.4521 MEGLSKKEAEFCDRGSIFSSAPEAPPSPSTPLQHPREKKQLLSVDEEEEEKDPKHVVVTTLLDLNVSGDDSFTPEEGAELNLLTCLDVTANSSETPTPLDAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQQIMAFGLPLLHRNNHYAAAPSMASLPLYGACSNRGLGIQAHSMIHKPSHGFGGSYGHHHGWSRPIIDQQPGVAKLAVPDFLRTKSALSSSQSSVGRFEMVNSTNTMMNSVANKEITGCVATGGTLLKSSANQEEMKHLDLSLKL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00480 288 MobiDBLite consensus disorder prediction 15 54 - -
Cca05g00480 288 MobiDBLite consensus disorder prediction 38 54 - -
Cca05g00480 288 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Cca05g00480 288 Gene3D Classic Zinc Finger 87 148 - -
Cca05g00480 288 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 288 IPR044246 GO:0009788
Cca05g00480 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Cca05g00480 288 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 288 - -
Cca05g00480 288 SUPERFAMILY beta-beta-alpha zinc fingers 103 133 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00480 Cca-Chr5 10597463 10598817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00480 46 288 C2H2 Transcription Factor Family AT5G10970 41.833 6.67e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca05g00480 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00480 - - gmx:100809569 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00480 05 10597463 10598817 Cca03g01616 03 35065228 35066052 PCT