Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00478 ATGACCGTGGTGGAGGATCATAGGATGGATGATCTCAGAGACCAGTTTCCTATAGGAATGCGTGTTCTTGCTGTTGATGATGACCCAACATGCCTCAAGGTTTTGGAGACTCTGCTTCGAAAGTGTCAATACCATGTAACTTCCACGAAAAATGCAATAACAGCATTGAAGTTATTGAGAGAAAACAAAAACAAATTTGACCTGGTAATCAGTGACGTGCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTGGGGCTTGAGATGGACCTACCTGTTATAATGTTGTCTGTAAATGGTGATCCAAAGATGGTGATGAAGGGAATTACTCATGGAGCTTGTGATTATCTTCTGAAACCTGTTAGAATTGAGGAGCTACAGATCATTTGGCAGCATGTAATCAGGAGGAAGAAGACTGATCCAAAGGAGCAGAACAAAACCAGCAACCAAGAGAAACCTGATGCTGATTGCTGCAATGGAAGAGAGTCAGCAGCAACAGGAAATTCTGATCAAAGTGGAAAATCTTCCAAAAGGAGAAaggatgaggatgaagatgaacatgaggatcatgagaatagccatgacaatgaggaCCCTTCAACTCAGAAGAAGCCTCGAGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTTCTGCTGTTAATCAATTAGGCATCGAGAAAGCTGTACCTAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTAACCAGGGAGAATGTGGCCAGCCACCTCCAGAAATATAGGCTTTATCTGAAAAGAATAAGCCGTGTGGCGAACCAACAGGCTAATATGGTGGCAGCATTAGGCACTGCAGATTCATCCTATTCGAGAATGGGTTCTCTGAGTGGACTTAGGCCTTTGCAGACTTTTTCTGGTCCTCAACAGTTTCATAATAATGCTTTCAGACCCTTTCCACCTGGTGGAATGACTGGTAGATTCAGCACTTCTGTTGGTCTAAATGTGCATGGGTTACCTTCTTCAGAAAATCTTAAATTGGGTCATGCACAAAATTTAAACAACTCTATGAATGATCCACTCAAGTTCCAATCATCCCAAATTGGTGGTAATCATAATGGTATTCAGGGAATGCCAACGTTTCTAGGGCTTGATCAATTGCAACATAATAAAGGTGTTAGTGTTGGTCCTGTTCAAAACCTGTCTCCTATTATTGATGCTAAATCAACTTTTCCCATGCCAAATAATGCCTTGACTAAAGACACACAAGGGAGTGGAGCATATCAAAATTTAACTCAATTAGCTTCTCAGAATTCACAATTTTCTATCCCTTTGATGGATCAAGGTAGGTGTAGTGATATTTGGGCAAGTCCTGTGCAGTCTCCTGGTACAAACTCTTACCCTCCAAGTGATGTGAATCTGAGTGGTGCATCATCCATTACTTCAATGTCTAATCAATCACATGATTCACTCACAGATATGCCTTCCCAAGGAGTCTTTTTAACAAACAATTCAGGACTAATGAGCAATAATGTGCCATTACAAGGGTGGGATAACCACAATCATGATACTAGTTACCATTCTAATGCTATTGGTAATACAATAGACTCTCTCATTTCAGTGAACCCTGTTGATACAGAAGGACACACTACTGTTAACTCAACCTTCAATAGAGACTTGGGCTTCAATTTTTGTGATCAATTTCAGATGAAGCCTGATGGAGTTATGGGATTGAGTGGAGAAACCTCATTGAAAGCACACCAAGGGTACATCATGAACCAACAGAAGTCTCAAAATAGTTGTGCCACTAACATTAATGTTGGCTCACTGGAATACTTTGTCAATTCAATGATGACACAGAACCAAGGGAAGGTGAACTTATTGGATGATTACTTATGCGACAATAATGACTCTGCGGGGACATCAACGTGA 1917 0.398 MTVVEDHRMDDLRDQFPIGMRVLAVDDDPTCLKVLETLLRKCQYHVTSTKNAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNGDPKMVMKGITHGACDYLLKPVRIEELQIIWQHVIRRKKTDPKEQNKTSNQEKPDADCCNGRESAATGNSDQSGKSSKRRKDEDEDEHEDHENSHDNEDPSTQKKPRVVWSVELHRKFVSAVNQLGIEKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISRVANQQANMVAALGTADSSYSRMGSLSGLRPLQTFSGPQQFHNNAFRPFPPGGMTGRFSTSVGLNVHGLPSSENLKLGHAQNLNNSMNDPLKFQSSQIGGNHNGIQGMPTFLGLDQLQHNKGVSVGPVQNLSPIIDAKSTFPMPNNALTKDTQGSGAYQNLTQLASQNSQFSIPLMDQGRCSDIWASPVQSPGTNSYPPSDVNLSGASSITSMSNQSHDSLTDMPSQGVFLTNNSGLMSNNVPLQGWDNHNHDTSYHSNAIGNTIDSLISVNPVDTEGHTTVNSTFNRDLGFNFCDQFQMKPDGVMGLSGETSLKAHQGYIMNQQKSQNSCATNINVGSLEYFVNSMMTQNQGKVNLLDDYLCDNNDSAGTST 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00478 638 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 6 613 - -
Cca05g00478 638 Gene3D - 19 157 - -
Cca05g00478 638 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Cca05g00478 638 Pfam Response regulator receiver domain 22 129 IPR001789 GO:0000160
Cca05g00478 638 SUPERFAMILY CheY-like 19 144 IPR011006 -
Cca05g00478 638 Pfam Myb-like DNA-binding domain 208 258 IPR001005 -
Cca05g00478 638 PIRSF RR_ARR_type-B 1 636 IPR017053 GO:0003677|GO:0003700|GO:0009736
Cca05g00478 638 Gene3D - 202 265 - -
Cca05g00478 638 MobiDBLite consensus disorder prediction 140 206 - -
Cca05g00478 638 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Cca05g00478 638 SMART REC_2 20 132 IPR001789 GO:0000160
Cca05g00478 638 MobiDBLite consensus disorder prediction 175 204 - -
Cca05g00478 638 CDD REC_typeB_ARR-like 22 136 - -
Cca05g00478 638 MobiDBLite consensus disorder prediction 140 160 - -
Cca05g00478 638 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 613 IPR045279 GO:0009736
Cca05g00478 638 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Cca05g00478 638 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00478 Cca-Chr5 10507543 10512041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00478 14 622 Response Regulator Gene Family AT2G25180 44.141 1.92e-128 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Cca05g00478 Response_reg 7.9e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00478 - K14491 gmx:100777171 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00478 05 10507543 10512041 Cca03g01618 03 35090587 35095060 PCT