Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00477 ATGGCTGCACCACATGATAATGATCCTAGAAGCAATATAGTTTCAATTTCAAGGGTTGTGTCTGTGCATCCCAAACTTGTGCAACCTCAGAGGGTTTTGACCCTTTCAAATTTGGATAGGCAGTGTCCAAACCTCATGCACTTGGTGTTCTTTTACAATAACCTGTCTCACCAAACGTTGAAGGACTTGTCCCTCAATTCAGTGTTTTCCAAGTTGAAATCTGGTTTGGAAGAGACCTTGACTCTGTGGTATCCAGGTGCAGGTAGGCTTAGGCCAAATCAAAGTGATGGCAAACTCAACCTGTGGTGCAACAACCATGGTGCAGTTCTGGCAGAGGCTGAAACATCTATTAAAATATCACAACTTGGAAACCTTTCAGAGTACAATGAATTCTTTGAGAATCTGGTTTATAAGCCAGCTTTTGATGGGAATTTCTCAAATATGCCTCTGATTGTTGCTCAGGTTACAAAATTTGGTTGTGGAGGCTATTCAATTGGCATTGGAACAAGCCACTCGTTATTTGATGGACCAGCAACCTATGAATTCTTGTCTGCATGGGCTTCAAATTCTGAAATTGTGAAAGGAAGAAGCAGATCTGAAGAGGTTCCAAAACCAGTGCATGAGAGAGGGATACTACTAAGTGGTGCTCTTAATCAAGCCTCAAGAGGGACTATAAATTTCCCTTCAAACTCATCAAGTTTAAGTGGTATGAAAACAAGGGCCATGGCAATAGATCACTTATATCAACTCATAATGCAAGCAGCTGCTAGTGGACAAAAGGGTTTTCCGATGCAAATTGGAGGAGCTTCTAATCAAAAGAAGTGTGTTCTTAAAACCTACCATCTTTCAGGTGCCATGATAGAAGACTTGAAAAGGAAACATTTCCCCATGCGAAGAGGTTCTCTTCCTTTCTCAACCTTTGAGGTTCTTGCGGCTCACCTTTGGAAGGCAAGAACCAAAGCCTTCCAGGCGACAAAAGAGAAGCTGGTGTGCCTCCAATTCGCGGTGGACATAAGGGCGAAGACGTCACCGCCACTGCCGAAACCCTTCACCGGAAACGCCTACGTGCTGGCCTCCATCATGATGCCGGCGTCGGAACTGGAGCATTCAAGCCACGAAGTGATCATCGAGAGAATAAGAGAGGCGAAGAACAGCGTCAACAACGACTACGTCAAAGCCTACGTGGAGGCCCTAGACTCTccgccgccgccgcagccgccgcAACAAGGTGGCAACCACTCTCTCCCTCCGCTCAACGACCTAACTGTGGTTTCCGATTGGACCAGAATGCCCTTCCACAACGTCACCTTCTTTCGCGCCAAACCCACCTATGCTTGCCCTTTGCGCACTCCCATGCCGCAGGTTGCGTACTTCATGCAGAGCCCTCTTGATGATTCCGCCGTTGACGTCAGAATCGGCTTTCACGCCGGAAACGATGTTGTAAGTGCTTTTACTCGCTGCTTCTTGAGCGTCCAGTGA 1479 0.4557 MAAPHDNDPRSNIVSISRVVSVHPKLVQPQRVLTLSNLDRQCPNLMHLVFFYNNLSHQTLKDLSLNSVFSKLKSGLEETLTLWYPGAGRLRPNQSDGKLNLWCNNHGAVLAEAETSIKISQLGNLSEYNEFFENLVYKPAFDGNFSNMPLIVAQVTKFGCGGYSIGIGTSHSLFDGPATYEFLSAWASNSEIVKGRSRSEEVPKPVHERGILLSGALNQASRGTINFPSNSSSLSGMKTRAMAIDHLYQLIMQAAASGQKGFPMQIGGASNQKKCVLKTYHLSGAMIEDLKRKHFPMRRGSLPFSTFEVLAAHLWKARTKAFQATKEKLVCLQFAVDIRAKTSPPLPKPFTGNAYVLASIMMPASELEHSSHEVIIERIREAKNSVNNDYVKAYVEALDSPPPPQPPQQGGNHSLPPLNDLTVVSDWTRMPFHNVTFFRAKPTYACPLRTPMPQVAYFMQSPLDDSAVDVRIGFHAGNDVVSAFTRCFLSVQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00477 492 Gene3D - 259 487 IPR023213 -
Cca05g00477 492 Gene3D - 11 223 IPR023213 -
Cca05g00477 492 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 11 491 - -
Cca05g00477 492 MobiDBLite consensus disorder prediction 397 417 - -
Cca05g00477 492 Pfam Transferase family 20 471 - -
Cca05g00477 492 PANTHER BRASSINOSTEROID-RELATED ACYLTRANSFERASE 1 11 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00477 Cca-Chr5 10497849 10505584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00477 14 476 Monolignol Biosynthesis Gene Families AT5G48930 22.796 2.46e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00477 K15400 - gmx:100803347 775.007