Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00476 GATTGGAATCCTCATGCTGATTTACAAGCTATGGCCAGAGCTCATCGACTTGGACAAACTAACAAGGTGATGATTTATAGGCTTATAACAAGGGGAACAATTGAAGAAAGGATGATTCAGATGACAAAGAAGAAAATGGTTTTAGAACACCTGGTTGTAGGGAGGCTAAAGGCTCAAAACATTAACCAGGAAGAGTTAGATGATATTGTAAGGTATGGCTCAAAGGAGTTATTTGCTGATGAGAATGATGAGGTGGGCAAATCTCGTCAAATTCATTATGATGATGATGCTATAGACAGATTGTTGGATCGCAATCAAGTTGGAGATGAAGAGGCTGCTTTGGATGGGGAAGATGAAGATGGATTTCTGAAGGCCTTTAAGGTGGCAAATTTTGAATACATCGAGGAAGTTGAGCCAGCAGAGGAGGTAGCACAAAATATAGCAAAGGAGAATCAATCCTCTGAGACCAGTTCCAAAAGAACAAATTACTGGGAAGAGTTGTTAAAAGACAGGTATGAAGAGCATCAAGTTGAAGAGTTAAATGCCTTGGGCAAAGGGAAGCGAAACCGCAACAAATGGCTGGGGGGTGGTTTTAGTGGTTTGGAAGATGTAAGCTCTGACGGTGAAGATGAGAATTACAAAGCGGATGTTACTGATGATGATTCAAATTCAAGTGAAGctactactactactactaGAAGGTCTCACAAAAAGAAAGCTCGCGCAGATAGCATGGAGCCACTTCCTTTAATGGAAGGTGAAGGAAAATCTCTGAAAGTACTTGGTTTTAATCAAAGTCAAAGGACTGCTTTTGTTCAACTTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAAGACTTTACCTCCCACATGAAGCAGAAGACTTATGAAGAAATAGAAGAGTATGGAAAACTGTTCTTGTCTCATATTGCGGAAGAAATAACTGATTCCCCTACATTCACTGATGGTGTTCCAAAAGAAGGACTTCGAATACAAGATGTACTTGTAAGGATTGCAATTCTTCTCTTGATAAAGGACAAAGCGAAGTTTGCATCAGAAAATCCTCAAACTCCGCTTTTTTCAGATGATATCTTGTTACGCTATGCAAATTTGAAGGGTACAAAGATATGGAAGGAGGAGCATGATTTAGTGTTGTTGCATGCAGTGTTGAAGCATGGCTATGGAAGGTGGCATGATATTGTTGATGATAAGGATCTGAACATTCAGAAGGTCATCTGTCAGGAGTTGAATATTCCATTTACAAATTTACTAGTTCAAGGACAAGTTGGTTCTCAAGTGCACAATGGTGCAAATATTTCAAATGTGGAGTCCAGCTGCAATCCATCTGGTAAAAATGGTAGGAGTCACATACCAGCTGATGGTGCAAATATGACAAATGTGCAATCGAGATGCAACCAATCTAAGGAGAGTGGTGCGAGTGCAAATTTACCAGTTCAAGGACAAGTTGGTTCTCAAGTGCACAATGGTGCAAATATGTCAAACGTGGAGTCCAGCTGCAACCCATCTTGTGAAAATGGTAGGAGTGACATAGCAGCTAATGGTGCAAATATGACAAGTGTGCAATCGAGCTGCAACCAATCTAAGAAGAGTGGTGTGAGTGGCATGGCTGCTGAAGGTGCACATGGTTCTGGCAATGCTGGGAACCAAGCACAGCTATGTCAAAAGACCTCCATATTGCATCAGTTTAAAGATATGCAGAGAAGACAGGCTGACTTTATAAAAAGAAGGGTTCTTCTCTTGGAGAAAGGTCTCAACGCTGAGTATCAGAAAGAATACTTTGGTGATTTGAAAGAAAATCCGGTGGCAAATGAAGAATTTAAAGGTAAATCCAAGGCGACAAACATGCCAAGTTATACATTGGGAGATTCTGACTCACAAATGATTGATCCACTACCCCGACTTGAAGCAATAGGTTCAGAGGAAATTGCTATTTCTGCATGTGATTACAATCCAGATCGATTGCAATTAGTTTTTCTCTATAATGAGATGTGCAAGACTGTGGATCAGAATGCCATGGATGTAGTTAAAATGTCTTTGGCCAGAGAACTGAGAGAAGTTCATGTTGTTAAGAACTTCCATAAGTTGGAAATTATTTCTGAAGATGTGAACCGAATTTTAAATCAACCAAATCAACGTTCAGCAGAAACGCAAGTACCGAATTCTGGCAGCAGTCAGACCTCCTCAACCAGAGAATACTCGGATAAGGAGAGTTCAACAAGCTACAAGTTCGTAACTGAATGGGGTGCTCGACATACTTCCTCGGCAAAAGGGTATTTAGCCGTGCAAAGTGGTCAGCAGACCTCCTCGACCAGAGAATACTCGGATGAGGAGAGTTCAACAAACTGTGGGTTCGTAACCGAACGGGATGCTCAACATATTTCCTCGGCAAGAGGGTACTCGGTCGTGCAAAGTGGTCAGAAGACCTCCTCAGCCGGAGAATACTCGAATGAGGAGAGTTTAACAAGTTGCGAGTTCGTAACCGAACGGGATGCTTGGCTTATTTGCTCGGTAAAAGGGTACTCGGCTGAGGAGAGTGCTCGACACATGCTTGTCTTTAGCTGA 2586 0.4145 DWNPHADLQAMARAHRLGQTNKVMIYRLITRGTIEERMIQMTKKKMVLEHLVVGRLKAQNINQEELDDIVRYGSKELFADENDEVGKSRQIHYDDDAIDRLLDRNQVGDEEAALDGEDEDGFLKAFKVANFEYIEEVEPAEEVAQNIAKENQSSETSSKRTNYWEELLKDRYEEHQVEELNALGKGKRNRNKWLGGGFSGLEDVSSDGEDENYKADVTDDDSNSSEATTTTTRRSHKKKARADSMEPLPLMEGEGKSLKVLGFNQSQRTAFVQLLMRFGVGDFDWKDFTSHMKQKTYEEIEEYGKLFLSHIAEEITDSPTFTDGVPKEGLRIQDVLVRIAILLLIKDKAKFASENPQTPLFSDDILLRYANLKGTKIWKEEHDLVLLHAVLKHGYGRWHDIVDDKDLNIQKVICQELNIPFTNLLVQGQVGSQVHNGANISNVESSCNPSGKNGRSHIPADGANMTNVQSRCNQSKESGASANLPVQGQVGSQVHNGANMSNVESSCNPSCENGRSDIAANGANMTSVQSSCNQSKKSGVSGMAAEGAHGSGNAGNQAQLCQKTSILHQFKDMQRRQADFIKRRVLLLEKGLNAEYQKEYFGDLKENPVANEEFKGKSKATNMPSYTLGDSDSQMIDPLPRLEAIGSEEIAISACDYNPDRLQLVFLYNEMCKTVDQNAMDVVKMSLARELREVHVVKNFHKLEIISEDVNRILNQPNQRSAETQVPNSGSSQTSSTREYSDKESSTSYKFVTEWGARHTSSAKGYLAVQSGQQTSSTREYSDEESSTNCGFVTERDAQHISSARGYSVVQSGQKTSSAGEYSNEESLTSCEFVTERDAWLICSVKGYSAEESARHMLVFS 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00476 861 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 32 372 - -
Cca05g00476 861 MobiDBLite consensus disorder prediction 198 249 - -
Cca05g00476 861 MobiDBLite consensus disorder prediction 766 789 - -
Cca05g00476 861 Pfam CHD subfamily II, SANT-like domain 230 363 IPR009462 GO:0003677|GO:0006338
Cca05g00476 861 Gene3D - 1 118 IPR027417 -
Cca05g00476 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 72 IPR027417 -
Cca05g00476 861 MobiDBLite consensus disorder prediction 207 221 - -
Cca05g00476 861 MobiDBLite consensus disorder prediction 460 483 - -
Cca05g00476 861 Pfam CHD subfamily II, DUF1087 141 191 IPR009463 -
Cca05g00476 861 MobiDBLite consensus disorder prediction 445 483 - -
Cca05g00476 861 MobiDBLite consensus disorder prediction 529 555 - -
Cca05g00476 861 MobiDBLite consensus disorder prediction 717 743 - -
Cca05g00476 861 Pfam CHDCT2 (NUC038) domain 376 409 IPR012957 -
Cca05g00476 861 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 32 372 - -
Cca05g00476 861 Gene3D - 333 474 - -
Cca05g00476 861 SMART DUF1087_2 138 213 IPR009463 -
Cca05g00476 861 SMART DUF1086_2 213 366 IPR009462 GO:0003677|GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00476 Cca-Chr5 10450099 10469843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00476 2 47 RAD5 or RAD16-like Gene Family AT5G22750 50.000 2.70e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00476 K11643 - gmx:100779829 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00476 05 10450099 10469843 Cca03g01619 03 35097160 35115306 PCT