Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00475 ATGTCTTTGAAGAATTCTAGATCGAGCGACCATAGTAGACTTGCTTTGCTTCTTGCCATCTCTCTTTCCGAACCATTTTCAAATCTGAAGCTCCCGCACTTTCTCATCGCATCATTCTTGCTCTCGAAAATGAGCAGCTCATTTGGGCTTCGAGCAAGATCAAAACACAGACCACTTTATACTATTGATGAGTCAGATGATGATTCAGATGTTTTGCCTAGAAAACGTAAGAAGCCTCAAGAAAAAATTGAGAAAATTGTTAGAAGTGAAACAAAAGACAATTCATGTCAAGCTTGTGGAGAAAGTGGAAATCTTCTGAGCTGTGAAACATGCACCTATTCTTTCCATCCGAGCTGTATACTCTCACCACTTAAGAGCCCCTTTCGAGACAATTGGAGGTGCCCTGAGTGTGTTAGCCCACTGAATGATATTGATAAGATATTAGACTGTGAGATGCGATCCACCGTAGCTGGTGAAAGTGATGCCACAAAATTGGATTCAAAGCAAAATTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCATATTTGCACTGCACATGGGTGCCTGAGGAAGAGTTTCTGAAAGCTTTCAAGGATCATCCAGGTCTAAAGGCCAAAGTAAACAATTTCCATCGTAATATGACCTCAGCCGATATACCTAATGAAGATTTTGTAGCCATTCGGCCTGAATGGACTACGGTTGATCGAATACTTGCATGCAGGGGTCACGAAGATAAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCATACGATGAATGCTACTGGGAGCTTGAGACAGATGTCTCTGCATTTCAAACAGAAATAGAAAGATACAATACATTTCAGTCTAGATCAAGGAAAATTTTCTCTAGCAAGAAAAAAGGAAGTGTTAAGGATGGTGCTAAATTGAATACGCAGAAGAAAGAATTTCAACAGTATGAACATAGCCCTCAATTTCTTACAGGGGGTACACTGCATTCATATCAACTTGAAGGATTGAACTTCTTAAGATTCTCTTGGTCCAAACAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATTCAGAGTATTGCTTTCCTTGCATCCCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCAACATTGCGAAACTGGGAACGGGAATTTGCAACTTGGGCACCTCAAATGAATGTTGTTATGTATTTTGGATCTGCCAAAGGTCGTGCTTTTATTAGAGAGCACGAGTTTTACTTTCCAAAGAATCAAAAGAGGATCAAGAACAAGAAATCTAGACAGATAGTTGACGAAAGCAAACAAGAAAGAATAAAGTTTGATGTACTTTTGACATCATATGAGATGATAAATTCTGATACATCATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTAGATGAAGGTCATCGTCTTAAAAACAAGGATTCTAAATTGTTTTCTTCATTGCAGCAATATTCCAGCAAACATCGTGTGCTTTTGACAGGAACTCCTCTTCAGAACAAATTGGATGAACTTTTTATGCTGATGCACTTCCTCGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTCCAGAAAGAGTTTAAGGATATTAATCGAGAAGAGCAAATATCAAGATTGCATACAATGTTGGCTCCACATCTCCTTAGAAGAATGAAGAAAGATGTCATGACAGAACTACCTCCAAAAAAGGAACTTATTTTACGTGTTGAATTATGCAGCAAACAAAAAGAATACTACAAGGCAATTTTAACCCGTAATTATCAGATATTAACTCGCCAAGGTGGTGCACAAATTTCTCTTATCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCCTATATGTTACAGGGAGTTCAACCGGATGTTAACGATGCAAAAGAATCATACAAGCAATTGCTTGAATCATCAGGGAAGCTACAGTTGTTGGACAAGATGATGGTGAAGCTTAAAGAGCAACGACATAGAGTCCTCATATATTCCCAATTTCAGAGCATGCTGGATTTGCTTGAAGATTACTGTTCTTACAAGCATTGGCAGTATGAAAGGATAGATGGGAAGGTTGGAGGAGCTGAAAGACAAATACGGATAGATCGTTTTAATGTTAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTACAACGGCTGACACAGTTATTATATATGACAG 2237 0.3849 MSLKNSRSSDHSRLALLLAISLSEPFSNLKLPHFLIASFLLSKMSSSFGLRARSKHRPLYTIDESDDDSDVLPRKRKKPQEKIEKIVRSETKDNSCQACGESGNLLSCETCTYSFHPSCILSPLKSPFRDNWRCPECVSPLNDIDKILDCEMRSTVAGESDATKLDSKQNFVKQYLVKWKGLSYLHCTWVPEEEFLKAFKDHPGLKAKVNNFHRNMTSADIPNEDFVAIRPEWTTVDRILACRGHEDKKEYLVKWKELPYDECYWELETDVSAFQTEIERYNTFQSRSRKIFSSKKKGSVKDGAKLNTQKKEFQQYEHSPQFLTGGTLHSYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGSAKGRAFIREHEFYFPKNQKRIKNKKSRQIVDESKQERIKFDVLLTSYEMINSDTSSLKPIKWECMIVDEGHRLKNKDSKLFSSLQQYSSKHRVLLTGTPLQNKLDELFMLMHFLDAGKFGSLEEFQKEFKDINREEQISRLHTMLAPHLLRRMKKDVMTELPPKKELILRVELCSKQKEYYKAILTRNYQILTRQGGAQISLINVVMELRKLCCHPYMLQGVQPDVNDAKESYKQLLESSGKLQLLDKMMVKLKEQRHRVLIYSQFQSMLDLLEDYCSYKHWQYERIDGKVGGAERQIRIDRFNVKNSSRFCFLLSTRAGGLGINLTTADTVIIYD 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00475 745 Pfam Chromo (CHRromatin Organisation MOdifier) domain 144 200 IPR023780 -
Cca05g00475 745 Pfam Chromo (CHRromatin Organisation MOdifier) domain 235 282 IPR023780 -
Cca05g00475 745 Gene3D - 142 217 - -
Cca05g00475 745 ProSitePatterns Zinc finger PHD-type signature. 96 137 IPR019786 -
Cca05g00475 745 ProSiteProfiles Chromo and chromo shadow domain profile. 142 224 IPR000953 -
Cca05g00475 745 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 47 710 - -
Cca05g00475 745 CDD SF2_C_SNF 649 745 - -
Cca05g00475 745 SUPERFAMILY Chromo domain-like 108 221 IPR016197 -
Cca05g00475 745 ProSiteProfiles Chromo and chromo shadow domain profile. 234 296 IPR000953 -
Cca05g00475 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 654 745 IPR001650 -
Cca05g00475 745 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 47 710 - -
Cca05g00475 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 561 IPR027417 -
Cca05g00475 745 SMART ultradead3 324 534 IPR014001 -
Cca05g00475 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 340 526 IPR014001 -
Cca05g00475 745 Gene3D - 571 745 IPR027417 -
Cca05g00475 745 SUPERFAMILY Chromo domain-like 218 283 IPR016197 -
Cca05g00475 745 SMART PHD_3 95 138 IPR001965 -
Cca05g00475 745 Pfam PHD-finger 96 138 IPR019787 -
Cca05g00475 745 ProSiteProfiles Zinc finger PHD-type profile. 93 140 IPR019787 -
Cca05g00475 745 SMART chromo_7 232 286 IPR000953 -
Cca05g00475 745 SMART chromo_7 141 204 IPR000953 -
Cca05g00475 745 Pfam Helicase conserved C-terminal domain 651 745 IPR001650 -
Cca05g00475 745 Gene3D - 223 283 - -
Cca05g00475 745 Pfam SNF2-related domain 348 628 IPR000330 GO:0005524|GO:0140658
Cca05g00475 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 745 IPR027417 -
Cca05g00475 745 CDD CD1_tandem 140 214 - -
Cca05g00475 745 CDD CD2_tandem 232 281 - -
Cca05g00475 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 141 IPR013083 -
Cca05g00475 745 Gene3D - 320 570 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00475 Cca-Chr5 10424129 10434474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00475 643 745 RAD5 or RAD16-like Gene Family AT5G22750 31.068 3.08e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca05g00475 SNF2_N 3e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00475 K11643 - gmx:100790230 1187.17