Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00474 ATGGCAAACTACCACCGCAACAACGTGGAAAGCCTTGTTCTGGGGCACCGTCCGAAGTCCGGCGGCGACGGCGGGCACTTCCGGCTATGGAACTCCCTCTCGGCGGCCTCATTCCGGCGGCTCATCTTCGACGCCGTGAGCTGCGGCGCCAGCTCGCGCTACGCGGAGAGATCGACCGTGGACGAGGAGGAGCAGCAGCGTAAGACGAAGGCGAGTGTGCGGTCGGAGAAGCTCTCCGATCTGCTGAACATTGCggaggtggaggcggacgcggagacgaagaagaaggaggagaggctggaggagCTGAAGCAGCTCGTGAAGGAGCTTCAACGCgaaggagaagaagaagaagaagaagaagaagaagaagaagaaAGAGAGGGTTTGGTGAAAGTGAAACGAAGAGAAGGTGCTGCGGCGAGAGTGAGGCTTCTGGCGAAGGAGGATTTGGAAGTGAGGGGAACGCTCGCCATGCTCGGTGCTATTCCTCCGCTTGTGGCAATGCTTGATTCTCGACACGACGTTGCTGCGCTCGTCGCTTCGCTCTACGCGCTGCTCAACCTCGGAATCGGAAACGACGCGAATAAAGCAGCTATTGTTAAAGTTGGGTCTGTTGAGAAGATGCTGAAGTTGATTGAATCTCCGGATGGTCTAGATTCTTCGGTTTCTGAAGCAATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATGCGAATAAGCCCATAATTGGGTCTTCGGTTGCAATTTCTTTCTTAGTTAGAACCCTTAAGGATTTAGATAACAACACTAGTCCCCAAGCCAAGCAAGATGCTATGCGAGCACTGTACAATCTTTCAATCTTCCCAGCCAATGTTGCGTTCATTTTGGAAACCGATTTGGTTGTGTTTCTGGTGAACTCAATAGGGGACATGGAGGTAACGGAAAGAACCCTTGCAATCCTCAGCAATGTGGTGTCAACCCGAGAGGGCAGAAAGGCAATCAGTGCAGTGCCGGATTCGATCCCAATTCTAGTGGATGTGTTGAATTGGACTGATTCACCAGAGTGCCAGGAGAAGGCATCGTACATTTTGATGGTTATGGCACACAAGTCATATGGGGACAAGCAGGCCATGGTTGAGGCAGGGATTGGGTCATCACTGCTTGAGTTGTCCCTTTTGGGTACCACATTGGCTCAGAAAAGGGCATCAAGGATATTGGAAATTTTGAGGGTGGACAAGGGAAAGCAGGTTTCTGGGAACTATGGCTTGGGTGCAGCTGTCTCTGCCCCTATTTGTGGCTCTTCTTCGGCGTGTCAGAAGCCGGATGGAGGAGGAAAAGAATGTTACGAGGAAGAGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAATTAGTCCAGCAGAGTTTGCAAAACAACATGAGAAAAATTGTAAAGAGAGCCAACTTGCCTCAAGACATTGTGCCATCAGATCATTTTAAGACGCTCACTTCAAGTTCGACTTCGAAGAGCCTGCCATTTTGA 1509 0.4751 MANYHRNNVESLVLGHRPKSGGDGGHFRLWNSLSAASFRRLIFDAVSCGASSRYAERSTVDEEEQQRKTKASVRSEKLSDLLNIAEVEADAETKKKEERLEELKQLVKELQREGEEEEEEEEEEEEREGLVKVKRREGAAARVRLLAKEDLEVRGTLAMLGAIPPLVAMLDSRHDVAALVASLYALLNLGIGNDANKAAIVKVGSVEKMLKLIESPDGLDSSVSEAIVANFLGLSALDANKPIIGSSVAISFLVRTLKDLDNNTSPQAKQDAMRALYNLSIFPANVAFILETDLVVFLVNSIGDMEVTERTLAILSNVVSTREGRKAISAVPDSIPILVDVLNWTDSPECQEKASYILMVMAHKSYGDKQAMVEAGIGSSLLELSLLGTTLAQKRASRILEILRVDKGKQVSGNYGLGAAVSAPICGSSSACQKPDGGGKECYEEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPQDIVPSDHFKTLTSSSTSKSLPF 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00474 502 MobiDBLite consensus disorder prediction 111 130 - -
Cca05g00474 502 Coils Coil 443 463 - -
Cca05g00474 502 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 502 - -
Cca05g00474 502 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 502 - -
Cca05g00474 502 Coils Coil 86 128 - -
Cca05g00474 502 Gene3D - 263 414 IPR011989 -
Cca05g00474 502 SMART arm_5 324 363 IPR000225 GO:0005515
Cca05g00474 502 SMART arm_5 150 191 IPR000225 GO:0005515
Cca05g00474 502 SMART arm_5 193 236 IPR000225 GO:0005515
Cca05g00474 502 SMART arm_5 237 281 IPR000225 GO:0005515
Cca05g00474 502 SUPERFAMILY ARM repeat 135 400 IPR016024 -
Cca05g00474 502 Gene3D - 77 262 IPR011989 -
Cca05g00474 502 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 204 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00474 Cca-Chr5 10341776 10345005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00474 143 424 U-box Gene Family AT1G24330 30.667 4.41e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00474 - - gmx:100788575 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00474 05 10341776 10345005 Cca03g01623 03 35202337 35204313 PCT