LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g00467	ATGAAAGCAAACTTAGGTAGAATAATTCTCCTTAACCTTGAAACATGTGTAATGTATCAACATATATATCCTTATATAATACAAAATGCTACACAAGTTGAAGGGTGCATCATCTTCCAAACTCTAAtcctcaccatgctactccctccctccaccaccttcatactcttcctcctcttctcctcAACGCACTCTCTCTTCTTCAACATCACCAACTTCGAGGACCCCGCAGCCTCCTCCGCCATCTCCTACCAAGGCGACGGAAGAGCCACCAACGGCTCCATCGACCTCAACAAAGTCAGTTACCTCTTCCGCGTCGGAAGAGCCATCTACTCCCGCCCCCTCCGCCTCTGGGACTCCTCCTCCGGCGTCGCCGCCGACTTCGCCACGCGCTTCGCCTTCTCCATCTCCCGCGCCAACGACTCCGACCCCTCCATTGGGGATGGCTTCACGCTTTACATCGCTCCCTTGGGATACCAGATTCCGCCCAACTCCGCCGGCGGCACCTTCGCCCTCTTCAACGCCACCACCAACAATGACCTCCCCGAGAATCATGTTGTCGCCGTCGAGTTCGACACCTTTGTAGGGTCCACCGACCCTCCCATGCAACACGTGGGAATCGACGACAACTCGCTTACCTCGGTAGCTTTTGCCAAGTTCGACATCGACAACAACCTCGGAAAAACATGTCACGCGTTGGTCACCTACACCGCCTCCTCTCAAACGCTCTTCGTTTCGTGGTCTTTTAAAGGAAAACCAATAACCACGAATACAAACGCCAACAATAACGAGTCTTCTCTGTCTTACCAAATTGACCTCAAGAAAATTCTCCCTGAGTGGGTCAACATTGGATTCTCAGCCTCAACGGGGCTTTCTACCGAGAGAAACGTTATTCACTCGTGGGAGTTTAGTTCCACTTTGAATTCCACCTTTGATGAGAGCACTCCGAAACCAGAGCACAAAGGGTCAAACTCAAAGCTCGtgttgactgttgcggttgtttgtccagcggtgttgttgttactgtctgctgCGACTACCGTTGTTTTGCTGATGAGAAAAAAGAAAAGAAGGGAGAGTTGCATGTTGTATGAAGTTAACGAGCTTGGTCCCGCTTCAGTTAAATTTGACTTGGACAAAGCAACCATACCAAGAAGATTCGAGTACAAAGAACTAGTGGATGCCACGAACGGTTTCTCAGACGATAGAAGGCTGGGACAAGGAGCTTCAGGGCAGGTTTACAAAGGGGTGTTGAGTTACCTCGGAAGAGTGGTTGCCGTGAAGAGAATCTTCGCGGACTTCGAGAATTCAGAGAGGGTTTTCATCAACGAGGTGAGGATCATAAGCAGGCTCATCCACAAAAACTTAGTCCAATTCATAGGGTGGTGCCACGAGGAAGGCGAGTTTCTCCTAGTGTTCGAGTACATGCCCAACGGGAGCCTGGACACGCACTTGTTCGGTAACAAGAGGACAGTGGAATGGCAGGTGCGGTACAAGGTTGCGTTAGGGGTGGCGACGGCGCTTCGTTACCTCCACGAGGACGCGGAACAGTGCGTGCTGCACAGGGACATAAAATCGGCGAATGTTTTGCTGGACAACGAGTTCAACACCAAGGTTGGGGACTTCGGAATGGCGAAGTTGGTGGATCCGAGGTTGAGGAGTCAGAGAACGGGGGTGGTGGGGACTTACGGGTACTTGGCGCCGGAGTATGTGGGCGGAGGGAGGGCTAGTAGGGAATCGGATGTGTACAGTTTTGGGGTGGTGGCGTTGGAGATAGCGAGTGGGAGGAGAACGTATCAAGAGGGGGAGTTTCACGTGAGTTTGATGAACTGGGTGTGGGAGCTTTATGTTGAGGGGGAGATAGTGAGAGCTGCGGATGAGAAACTGAAGGGGGAGTTTGAGGTGAGTGAGATGGAGAGTTTGCTTGTGGTGGGGCTTTGGTGCACCAATCCCAATGATAAGGAGAGGCCTAAGGCGGCGCAGGTCATCAAGGTTTTGCAGCTTGAAGCGCCTCTGCCTCTGCTTCCTCTTGACATGTATCAACGCGCTCCTCCTCCTCCTCAAATCATTAGGCTCCCACATCATCATCATTCATTGCAATCGCCACCTATTACTACTAGTCTTACCAGTGTTGGAAGATAA	2142	0.4874	MKANLGRIILLNLETCVMYQHIYPYIIQNATQVEGCIIFQTLILTMLLPPSTTFILFLLFSSTHSLFFNITNFEDPAASSAISYQGDGRATNGSIDLNKVSYLFRVGRAIYSRPLRLWDSSSGVAADFATRFAFSISRANDSDPSIGDGFTLYIAPLGYQIPPNSAGGTFALFNATTNNDLPENHVVAVEFDTFVGSTDPPMQHVGIDDNSLTSVAFAKFDIDNNLGKTCHALVTYTASSQTLFVSWSFKGKPITTNTNANNNESSLSYQIDLKKILPEWVNIGFSASTGLSTERNVIHSWEFSSTLNSTFDESTPKPEHKGSNSKLVLTVAVVCPAVLLLLSAATTVVLLMRKKKRRESCMLYEVNELGPASVKFDLDKATIPRRFEYKELVDATNGFSDDRRLGQGASGQVYKGVLSYLGRVVAVKRIFADFENSERVFINEVRIISRLIHKNLVQFIGWCHEEGEFLLVFEYMPNGSLDTHLFGNKRTVEWQVRYKVALGVATALRYLHEDAEQCVLHRDIKSANVLLDNEFNTKVGDFGMAKLVDPRLRSQRTGVVGTYGYLAPEYVGGGRASRESDVYSFGVVALEIASGRRTYQEGEFHVSLMNWVWELYVEGEIVRAADEKLKGEFEVSEMESLLVVGLWCTNPNDKERPKAAQVIKVLQLEAPLPLLPLDMYQRAPPPPQIIRLPHHHHSLQSPPITTSLTSVGR	713

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g00467	713	SUPERFAMILY	Protein kinase-like (PK-like)	383	689	IPR011009	-
	Cca05g00467	713	CDD	lectin_legume_LecRK_Arcelin_ConA	68	307	IPR001220	GO:0030246
	Cca05g00467	713	MobiDBLite	consensus disorder prediction	699	713	-	-
	Cca05g00467	713	Pfam	Protein kinase domain	400	664	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca05g00467	713	MobiDBLite	consensus disorder prediction	692	713	-	-
	Cca05g00467	713	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	519	531	IPR008271	GO:0004672\|GO:0006468
	Cca05g00467	713	Gene3D	-	64	316	-	-
	Cca05g00467	713	ProSitePatterns	Protein kinases ATP-binding region signature.	405	428	IPR017441	GO:0005524
	Cca05g00467	713	Gene3D	Transferase(Phosphotransferase) domain 1	476	670	-	-
	Cca05g00467	713	Pfam	Legume lectin domain	67	311	IPR001220	GO:0030246
	Cca05g00467	713	PANTHER	LECTIN RECEPTOR KINASE	66	681	-	-
	Cca05g00467	713	SMART	serkin_6	399	668	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca05g00467	713	PANTHER	-	66	681	-	-
	Cca05g00467	713	ProSitePatterns	Legume lectins alpha-chain signature.	277	286	IPR000985	-
	Cca05g00467	713	Gene3D	Phosphorylase Kinase; domain 1	384	475	-	-
	Cca05g00467	713	ProSitePatterns	Legume lectins beta-chain signature.	187	193	IPR019825	-
	Cca05g00467	713	ProSiteProfiles	Protein kinase domain profile.	399	675	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Cca05g00467	713	SUPERFAMILY	Concanavalin A-like lectins/glucanases	58	307	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g00467	Cca-Chr5	10185183	10187444	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca05g00467	53	679	Receptor kinase-like Gene Family	AT5G10530	44.984	3.78e-179	524

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Cca05g00467		Pkinase	4.2e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g00467	-		-	vun:114193012	1035.02