Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00466 ATGGAGGAGATGTCCTTTGTGGTTGCAGTGCCATTAAGAGTAGGTAATTGTAATTCAGTCTGTGATAAACCAACCATAGCTACCCACATGGATGTATCCAGATTTAAGCTGATGGCGGATACAGGCCTTTTATCTAATTCTGCAACTAAGGTTTTCACCGAGACGGTTGCGGGTTCTGAGGATTGTCATGATAGTGGCAATTTGGAGGATGAAGTTGGTATTACTGAAGCATGTGATAGGGTAGTTGAGAGTCCTTTGTTGGATATGATATCCCAAAATAGAAGTGCTTTGGTTGCTGGTGATGAAGAGTTAACCATGGAAATTGAGGAGGATTCGTTGTCATTGGAAGGCGACCATGTTGTTGATAGCTCGTGTTCTCTTTCTGCAGTTAGTGAGAACAGTAGTGTGTGTGGAGAGGAGTCCTTTTGTTTTGATGCTACTTCAGATGTTGGGACACCGTGTTCTGCATACGTAGAGAAGAGCATCTGTGCTGCCAATATTGTTCCTGAGGTTGTTGACTTGGGGGAGTCAAATGTTGCGACAGATATTATGACTGAACCTCTTTCTGTGGCAGTGAGGCTTGAAGAAGAGACTGGTGTTAGATCTGGCCCAAAGCCTTCTGCAGTTGTTCTTCATCAGTTGCCTCAGGAAAAGGTGGTGAGTGGAACGGTTGGTAGAAGTGTTTTCGAATTGGATTATACCCCACTTTATGGATTCATATCTCTGTGTGGAAGAAGACCAGAGATGGAAGATGCAGTTGCAACTGTACCTCGATTTATGAAAATTCCTATTCAAATGCTAATTGGTAATCGGGTACTTGATGGAATGAACAAGTGTTTTAATCAGCAGATGACTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTTGCAAAGTATTGTCGTGAACATATCCATTTGGCCTTGACTGAGGAAATAGAATTTGTCAAGGAAGGTCTAATCAATGGGATTACTAAGGATGATTGCCAAGATCAGTGGAAAAAAACTTTCACCAATTGTTTCTTAAAGGTCGATGCTGAAGTTGGAGGAAAAGTTAATAATGAACCTGTTGCCCCAGAAACTGTTGGCTCCACTGCTGTTGTTGCTGTTATTTGTGCATCTCATATCATAGTTGCAAATTGTGGTGATTCAGGAGCGGTTCTATGTCGTGGAAAAGAACCTATGGCTTTATCAGTGGACCATAAACCTAACCGAGATGATGAATATGCAAGAATTGAGGCAGCTGGAGGGAAGGTGATTCAATGGAATGGTCATCGTGTATTTGGTGTTCTTGCAATGTCAAGGTCTATTGGTGATAGATATCTGAAGCCGTGGATCATTCCGGAACCGGAGGTTACATTTCTTCCCCGTACAAAAGACGATGAGTGTCTTATTCTGGCCAGTGATGGTCTCTGGGACGTTATGACGAACGAAGAGGTGTGTGATCTTGCTAGGAGACGAATACTTCTTTGGTACAAGAAAAATGGCTTGGAACAACCCTCATCAGAAAGGGGAGATGGAACTGACCCTGCTGCACAAGCAGCAGCAGAGTTTCTATCAAACCGCGCCCTCCAGAAAGGAAGCAAGGATAACATCACTGTGATTGTGGTTGATTTGAAACCCCAAAGAAAATATAAGAGCAAAACatga 1656 0.4293 MEEMSFVVAVPLRVGNCNSVCDKPTIATHMDVSRFKLMADTGLLSNSATKVFTETVAGSEDCHDSGNLEDEVGITEACDRVVESPLLDMISQNRSALVAGDEELTMEIEEDSLSLEGDHVVDSSCSLSAVSENSSVCGEESFCFDATSDVGTPCSAYVEKSICAANIVPEVVDLGESNVATDIMTEPLSVAVRLEEETGVRSGPKPSAVVLHQLPQEKVVSGTVGRSVFELDYTPLYGFISLCGRRPEMEDAVATVPRFMKIPIQMLIGNRVLDGMNKCFNQQMTHFFGVYDGHGGSQVAKYCREHIHLALTEEIEFVKEGLINGITKDDCQDQWKKTFTNCFLKVDAEVGGKVNNEPVAPETVGSTAVVAVICASHIIVANCGDSGAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVTFLPRTKDDECLILASDGLWDVMTNEEVCDLARRRILLWYKKNGLEQPSSERGDGTDPAAQAAAEFLSNRALQKGSKDNITVIVVDLKPQRKYKSKT 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00466 551 ProSitePatterns PPM-type phosphatase domain signature. 287 295 IPR000222 GO:0043169
Cca05g00466 551 ProSiteProfiles PPM-type phosphatase domain profile. 236 541 IPR001932 -
Cca05g00466 551 CDD PP2Cc 237 541 IPR001932 -
Cca05g00466 551 SMART PP2C_4 224 539 IPR001932 -
Cca05g00466 551 Gene3D - 223 551 IPR036457 -
Cca05g00466 551 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 100 551 - -
Cca05g00466 551 PANTHER ALPHABET, ISOFORM E-RELATED 100 551 - -
Cca05g00466 551 Pfam Protein phosphatase 2C 264 534 IPR001932 -
Cca05g00466 551 SUPERFAMILY PP2C-like 230 543 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00466 Cca-Chr5 10164930 10168337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00466 1 551 PP2C-type Phosphatase Gene Family AT1G17550 46.032 6.89e-156 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00466 K14497 - gmx:100805281 971.844