Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00463 ATGTCGACGGTGTACGTTCTAGAACCTCCGACGAAGGGGAAAGTGGTGGTGAACACCACGCGCGGCCCTCTGGACATTGAGCTGTGGCCGAAGGAGGCTCCCAAGGCGGTGCGGAACTTCGTTCAGCTCTGCCTCGAAAACTATTACGACAACACCATCTTCCACCGCATCATCAAGGACTTCCTCATCCAAGGTGGCGACCCCACCGCCTCCGGCACCGGAGGGGAGAGTATTTATGGTGGTGTTTTTGCTGACGAGTTTCATTCACGTCTGAAATTCAAGCACAGAGGAATAGTTGCAATGGCCAATGCTGGAACACCGAATTCCAATGGAAGTCAGTTTTTTGTCACTCTTGATCGTTGTGACTGGCTTGATCGCAAGCATACCATTTTCGGGAAGGTGACCGGAGATACGATGTATAATCTTTTGAGACTGGGCGAACTTGAAACCGATAAGAATGACCGACCTTTAGACCCACCAAAGATCTTATCAGTTGAGGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAGAAATCTCAGATTGAAGCTAAAGCTGATACAGAAAATAAAGAGTCAAGGAAGAAAGGCATAAAAAAATTGAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGAGGAAAAGGTATTGGCATCAGTGAAGCAAAAGATTAAGAGTAGTCATGATGTCTTGAACGATCCTCGTCTTCTAAAGGAAGAAACTCTCAATGATGAACTGAGTTTATCTGATGGTAAAGCAAGAAGAGATCGACAATTATCTGTAAGGGAAGCACTTAACTCAAAGAAAGAAGAGCCTCAGAGAGATTCTGAAGCTGGTAACATGGCTCATCTTGATTCCAGTGATGATGATGAAGCAGATTTTGATGCAAGAATGCGCATGCAAATACTCAAAAAGCGGAAGGAGTTGGGTGATATCCCTGCCAAGCCAAAGTCGCAAAATGGAAGGTCCAGTCCAGAGAACCATGAGGCGTCAGCAGCCAGGTCCAATGCTTCAAGTGTTGATGATGACCAACCAAAGGTGGAAAAGTTGTCCTTGAAGAAAAAGGGAGTTGGATCTGAAGCAAGATCCGAACGAATGGCTAATGCAGATGCAGATTTGCAGCTATTGAACAAAGCTGAGAGGGGAAGACAATTGCAGAAGCAGAAGAAACGCCGACTTCAAGGGCGTGAAGATGAAGTTCTGGCAAAACTTGAAAAATTTAAGAGTTCTTTATCAGCAAAGGCGACACCCCCCACTGATGAATCTGAAGATGTTAAAAATGAGGAATTATCTGACTGGAGAGATGTCACGTTAAAATTTGCCCCCGAGTCTGGCAAGGACCGCATGTCTCGCAATGAGGACCCAAACGACTATGTTGTGCACGACCCTCTTTTGGAGAAGGGAAAAGAGAAGTTTAATAGGATGGTAGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGGAGATCCCTTACTTGA 1488 0.4523 MSTVYVLEPPTKGKVVVNTTRGPLDIELWPKEAPKAVRNFVQLCLENYYDNTIFHRIIKDFLIQGGDPTASGTGGESIYGGVFADEFHSRLKFKHRGIVAMANAGTPNSNGSQFFVTLDRCDWLDRKHTIFGKVTGDTMYNLLRLGELETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKSQIEAKADTENKESRKKGIKKLNLLSFGEEAEEEEKVLASVKQKIKSSHDVLNDPRLLKEETLNDELSLSDGKARRDRQLSVREALNSKKEEPQRDSEAGNMAHLDSSDDDEADFDARMRMQILKKRKELGDIPAKPKSQNGRSSPENHEASAARSNASSVDDDQPKVEKLSLKKKGVGSEARSERMANADADLQLLNKAERGRQLQKQKKRRLQGREDEVLAKLEKFKSSLSAKATPPTDESEDVKNEELSDWRDVTLKFAPESGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMVAKQKRREREWAGRSLT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00463 495 Coils Coil 379 399 - -
Cca05g00463 495 MobiDBLite consensus disorder prediction 248 495 - -
Cca05g00463 495 MobiDBLite consensus disorder prediction 320 343 - -
Cca05g00463 495 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 5 201 IPR044666 -
Cca05g00463 495 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Cca05g00463 495 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Cca05g00463 495 CDD cyclophilin_CeCYP16-like 8 179 - -
Cca05g00463 495 MobiDBLite consensus disorder prediction 422 495 - -
Cca05g00463 495 MobiDBLite consensus disorder prediction 394 408 - -
Cca05g00463 495 PANTHER SPLICEOSOME-ASSOCIATED PROTEIN CWC27 HOMOLOG 5 201 - -
Cca05g00463 495 SUPERFAMILY Cyclophilin-like 14 181 IPR029000 -
Cca05g00463 495 MobiDBLite consensus disorder prediction 248 316 - -
Cca05g00463 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Cca05g00463 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Cca05g00463 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
Cca05g00463 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Cca05g00463 495 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Cca05g00463 495 Gene3D - 2 182 IPR029000 -
Cca05g00463 495 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Cca05g00463 495 MobiDBLite consensus disorder prediction 344 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00463 Cca-Chr5 10115343 10122511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00463 9 172 U-box Gene Family AT5G67530 47.561 1.51e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00463 K12737 - gmx:100793148 857.055