Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00462 ATGTCAAGCACAAAAACCTTCCTCATCGTAGAGGGCACCAATGTTTTTCCTCCCGAAGAAGAGGATATAGCCCATGTTTTCAACCCCTTGCGTCAACTGTGTCAGCCCAACGTCGTTAAGTTGAAAGAAGCCGTAATCGATGATAGTGATATTGTAAGAGGAATTGTGGAATATGCACAAAGAAATCGTGTCAGTACTATAGTGGTTGGTGCACCCTGCACGAGCAAGAATACTTTGGCAAGGACTCTGAACCTGAGGAGCGGAAGCAAAAAATTTAAAGGCCACGATATTTCAACAGGCGTAATGAGATCAGCCCCAGATTACAGTTCAGTGTACGTAATTTCAAAAGGGAAGATAGTTGGAGCTAGACCAGCAATACGCCCAATGATAAACGTGGTTGCTGCACCAAAAGAAAATGGAGTAAGGTCACATTCACATAGAAGAGGGAGCACCAATGGAAGATCAGAAAGATCACCTACACCTGAAATGTCAAGGTCTTCTTCAGCTGGTCAGTCAATGGACAAGAGGTCACTATATAACCTCCGCAACTCAAGCTCGGGTGGAAGTGACTCTGAAGGGTCACATCGAGTTGGGTCAGTGGATCATAGAACTAAACAAGATTGTGATTCAGGCTCTGCATCAGATTCCCAATTCTCAGCTGAAATGGAAGCTGAGATGAAAAAATTGAGGCTCAAACTGAAGCAAACTATGGACATGTACAACTCAGCTTGCAAAGAAGCAATCACAGCCCAAAACAAGGCTATAGAGCTTAACCAACGGAAACTGAATGAGGAACGTATGGCTGAGGAAGCTAAGTTGTCTAAAGAGGCAGCTATTGCAATGGCAGAAAAGGAGAAGGCTAAAGCCAAAGCTGCCTTGGAAGCAGCTGAAGAAGCCATTAAGATGGTTGAAAAGGAAGCACATAGAAGATTTCATGCAGAGATGAAGGCCAGGAGAGAGGCACAAGAAAAGGATCGGGCATTAAATCAGTTGGCTTGCAAGGATGTTCGATATAGAAAATACACTATAACTGATATTGAAGACGCCACTCAAAAGTTCAACCCATCACTGAAAATAGGTGAAGGTGGATATGGACCTGTGTTTAAAGGCCAACTTGATCACACCCAGGTCGCAATCAAACTTTTAAACCCTGATGCTTCCCATGGAAGGAGGCAGTTCCAACAAGAGGTTGAGGTATTATGCAGCATAAGGCATCCTAACATGGTCCTCCTCCTTGGCGCGTGTCCCGAGTACGGATGCTTAGTGTACGAGTACTTGGAAAATGGTAGTTTAGAAGATAGATTATTGTTGAAAAATGATAGCCCTCCTATTCCATGGTGGAAACGTTTTGAAATAGCTGCTGAGATTGCAACCGCACTCCTTTTCCTTCACCAAACAAAGCCAGAGCCAATTGTGCACCGGGACCTTAAACCCGCCAACATCCTCTTGGACAAGAACTTTGTGAGCAAAATAAGTGATGTTGGTCTTTCAAGACTAGTGCCACCTTCTGTGGCTGATTCTGTCACACAATATCACTTAACCGCAGCTGCTGGAACCTTTTGTTACATTGACCCAGAGTACCAACAAAGTGGGATGCTAACAACAAAGTCAGACATATATTCTTTGGGGATAATGCTACTACAAATCATCACAGCCAAGCCTCCAATGGGGCTTGCACACCATGTTAGGAGGGCAATTGAAAATGGAACATTTTCAGATATGCTTGATCCTGATGTCCCTGGTTGGCCAGTTGAAGAGGCTCTAGCATTTGCTAAACTCTCATTGGCTTGTGCAGAGCTCAGTAAAAAGGACAGGCCTGATCTTGCATCAGTGGTAGTGCCAGAGCTTAGCCGCTTAAGGGAATTTGGATACACAGCATCGAAAGCTCAGAATCGCCCCAATGCCTACACCAAGGCCAGGAACAAACACATAAAATAG 1938 0.4443 MSSTKTFLIVEGTNVFPPEEEDIAHVFNPLRQLCQPNVVKLKEAVIDDSDIVRGIVEYAQRNRVSTIVVGAPCTSKNTLARTLNLRSGSKKFKGHDISTGVMRSAPDYSSVYVISKGKIVGARPAIRPMINVVAAPKENGVRSHSHRRGSTNGRSERSPTPEMSRSSSAGQSMDKRSLYNLRNSSSGGSDSEGSHRVGSVDHRTKQDCDSGSASDSQFSAEMEAEMKKLRLKLKQTMDMYNSACKEAITAQNKAIELNQRKLNEERMAEEAKLSKEAAIAMAEKEKAKAKAALEAAEEAIKMVEKEAHRRFHAEMKARREAQEKDRALNQLACKDVRYRKYTITDIEDATQKFNPSLKIGEGGYGPVFKGQLDHTQVAIKLLNPDASHGRRQFQQEVEVLCSIRHPNMVLLLGACPEYGCLVYEYLENGSLEDRLLLKNDSPPIPWWKRFEIAAEIATALLFLHQTKPEPIVHRDLKPANILLDKNFVSKISDVGLSRLVPPSVADSVTQYHLTAAAGTFCYIDPEYQQSGMLTTKSDIYSLGIMLLQIITAKPPMGLAHHVRRAIENGTFSDMLDPDVPGWPVEEALAFAKLSLACAELSKKDRPDLASVVVPELSRLREFGYTASKAQNRPNAYTKARNKHIK 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00462 645 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 11 634 - -
Cca05g00462 645 PANTHER OS02G0152300 PROTEIN 11 634 - -
Cca05g00462 645 MobiDBLite consensus disorder prediction 154 193 - -
Cca05g00462 645 MobiDBLite consensus disorder prediction 137 220 - -
Cca05g00462 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Cca05g00462 645 Gene3D Phosphorylase Kinase; domain 1 330 425 - -
Cca05g00462 645 Coils Coil 245 306 - -
Cca05g00462 645 Gene3D Transferase(Phosphotransferase) domain 1 426 641 - -
Cca05g00462 645 SUPERFAMILY Protein kinase-like (PK-like) 336 612 IPR011009 -
Cca05g00462 645 ProSiteProfiles Protein kinase domain profile. 353 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca05g00462 645 Pfam Protein tyrosine and serine/threonine kinase 358 611 IPR001245 GO:0004672|GO:0006468
Cca05g00462 645 Coils Coil 219 239 - -
Cca05g00462 645 MobiDBLite consensus disorder prediction 195 209 - -
Cca05g00462 645 SMART serkin_6 353 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00462 Cca-Chr5 10085573 10094940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00462 41 623 Receptor kinase-like Gene Family AT5G12000 58.211 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Cca05g00462 PK_Tyr_Ser-Thr 1.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00462 - - gmx:100786386 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00462 05 10085573 10094940 Cca05g00462 05 10085573 10094940 ECH